Glyma01g24710 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g24710

Feature Type:	gene_model
Chromosome:	Gm01
Start:	32287634
stop:	32289710
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g24710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51670	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF668) \| chr5:20993560-20995096 FORWARD LENGTH=474	SoyBase	E_val: 1.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF05003	PFAM	Protein of unknown function (DUF668)	JGI		ISS
PF11961	PFAM	Domain of unknown function (DUF3475)	JGI		ISS
UniRef100_G7JTD5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Avr9/Cf-9 rapidly elicited protein n=1 Tax=Medicago truncatula RepID=G7JTD5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J6Y4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J6Y4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g24710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g101100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g24710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g24710

Limit To All Plant Sequences

>Glyma01g24710.1   sequence type=CDS   gene model=Glyma01g24710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGTTGCCACCATGGCATGGCGTCACAAGGCGGTGCCAAGGGCTGAAGTCCTCGGCATCCTCGCCTTTGACGCCGGAAAAACCATGTGCCACCTAATCTCCCTCTACCACTCCCTCTCCGACAAAGAAATAACCAAGCTTCGCAAAGAGGTGATCAACTCCAAAGGGGTAACATACTTGAATTCTCAACATGAGTGCTTCCTTCTCAACCTTGCCGCCGCAGAGCGCCTTGAGGAGCTTGACACGGCCGCAGACACTGTCTCACGGTTCGGCCGGAAATGCTCCGACCCCAGCCTCAGCCGCTTCGACCTCGTCTACGCCGACCTCAAGCTAGGCCTCATCGACCTCCGCAAGCTTAGTTACGGTGCTCGAAACACCCCAAAGATCATCTCCAAAATGGAAAAGTTTGTTTCTTCTACCAGAAGTCTTTATTTTGCCATGGAATACATGGCGGAACTCGAGGCTTCTGATAAGAAGAGACAAAGATTGAAGACGGTGGGAGCCACTAATTACAACAGCAACCCCAAACAAAACATGGAATACTTGAACGAGCAGATAGCGTATCATAGAAAACAAGTGCAGCAGTACAAGGAAGTTTCGCTATGGAGCCAAACATTGGACAAAACCGTTGGGATCATGGCTAAGCTTGTTTGCATTGTATACGCTAGAATATGTTCTGTTTTTGGAGGCTACATTTCTAATTGCAACTGCTATGAAATCAATGATGTTGACAACAACAACAACAATTGTTGTTGCCTCTTGGAACACCGCGAGTTGTACAAGAAAAATTATTGTCTTTATGAAGAATCACTTCAGAAGCGTGTCACAAGATCAGGTCCTATTCCCAAGGCTAGTAATAACAACAAAACCGGTGTGATACGGTTCTTGAACCGTGACGGTGAAGTTGATAGGCCAAAGAGTAGCGTTAATAATAGGGTTTTGAGGCTGGCGCCGCCATCGACGGTGGGCGGGGCGGGGCTGGCGGTGAGGTATGCGGAGGTGATTTTGTCCGCAGAGCAGTGGTTGCACGCTCCGGCAACGGTGGGGCAGGACGCGCGGGAGGGGTTGTATGAGATGTTGCCGGACAGGTTGAGGCAAAAGGTGGCGGCGAAGCTGAGGGGGCGGTGGAGGAGGGAGGAGGAGGGGGAGGCGCTGTCAGAGGGGTGGCGGGACGCGGTGGAGGAGATGTTGGAGTGGCTGTCGCCGGTGGCGCAGGACACGATGCGGTGGCAGGTGGAGAGGAGCATGGAGACGGGGAGGTTTGAGGCGAAGACGACGGCGTTGCTGCTGCAGACGCTGCATTACTCCGACTTGGAGAAGGCGGAGGCGGCCATTGTGGAGGTGTTGGTGGGGTTGAGTTGCATATATTGGTGTGAGAGAAGGTGA

Predicted protein sequences of Glyma01g24710

Limit To All Plant Sequences

>Glyma01g24710.1   sequence type=predicted peptide   gene model=Glyma01g24710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVATMAWRHKAVPRAEVLGILAFDAGKTMCHLISLYHSLSDKEITKLRKEVINSKGVTYLNSQHECFLLNLAAAERLEELDTAADTVSRFGRKCSDPSLSRFDLVYADLKLGLIDLRKLSYGARNTPKIISKMEKFVSSTRSLYFAMEYMAELEASDKKRQRLKTVGATNYNSNPKQNMEYLNEQIAYHRKQVQQYKEVSLWSQTLDKTVGIMAKLVCIVYARICSVFGGYISNCNCYEINDVDNNNNNCCCLLEHRELYKKNYCLYEESLQKRVTRSGPIPKASNNNKTGVIRFLNRDGEVDRPKSSVNNRVLRLAPPSTVGGAGLAVRYAEVILSAEQWLHAPATVGQDAREGLYEMLPDRLRQKVAAKLRGRWRREEEGEALSEGWRDAVEEMLEWLSPVAQDTMRWQVERSMETGRFEAKTTALLLQTLHYSDLEKAEAAIVEVLVGLSCIYWCERR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain