Glyma01g24601 - SoyBase

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Report for Sequence Feature Glyma01g24601

Feature Type:	gene_model
Chromosome:	Gm01
Start:	32084233
stop:	32086938
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g24601

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66760	AT	Annotation by Michelle Graham. TAIR10: succinate dehydrogenase 1-1 \| chr5:26653776-26657224 FORWARD LENGTH=634	SoyBase	E_val: 3.00E-49	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0006121	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, succinate to ubiquinone	SoyBase	N/A	ISS
GO:0022900	GO-bp	Annotation by Michelle Graham. GO Biological Process: electron transport chain	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005749	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex II	SoyBase	N/A	ISS
GO:0000104	GO-mf	Annotation by Michelle Graham. GO Molecular Function: succinate dehydrogenase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016627	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
PTHR11632	Panther	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	JGI		ISS
PF02910	PFAM	domain	JGI		ISS
UniRef100_G7KDJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Succinate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7KDJ3_MEDTR	SoyBase	E_val: 1.00E-50	ISS
UniRef100_UPI00023372D6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023372D6 related cluster n=1 Tax=unknown RepID=UPI00023372D6	SoyBase	E_val: 1.00E-75	ISS

Expression Patterns of Glyma01g24601

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g24601 not represented in the dataset	Glyma01g24601 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24601 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g100600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g24601

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g24601

Limit To All Plant Sequences

>Glyma01g24601.2   sequence type=transcript   gene model=Glyma01g24601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTAGATTTGTTTTAAAACAAAAAATGAATGGACAGGATTCATTATTTACTCATGTCTGTATTGTTTTTCTCGAATTGCCACACTGACCCAGCAATTTCTGCTGCATCTTCTTCACATCACAATCACAGAAACATGCCCGTGAGAGTATTGGAGAATACCGCAGCACCTTCTTCTCAGGTTTCAGGTGCCAATTCGGGAAGGAGTTCGTGCCAATCTTGTAGTCTTCTAGGCGTTGGGCAGTTGGAAAATCTTCTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCACAAAAAGAGATGATGAGAAATGGATGAAACATACTTTGGGATATTGGGATAATGAGAAGGTGCGGTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAGGATACTTACTGAATTATTACGATGGATGATTTATACGGATTGGTTCACGAAGTATGAAGTATGGAATGGCAAGTGCAGGTGAAAAAAGATTCAATAAAGTGTCGTAGATGCATGACTTTGATGATAATCGTTTTATTCATCATCAATGCTGAACATGATCTATTCCAGGCAATCCTCAATGATGTACGATGTCTGTATTTAAAGCTGAAAATAATAGCCATAAAATCCCAATAAGTGTTCACTTTGTTGATCAACTTTGACCAGTGTACAATGTGCTAAGGGTTTATTTTCTGCACCCTAGTACTTTTAGTCTGTTTTATATTCATTTTTATTTTTCTAACCAAAGTAGCAAATGGAAGCCAGCTGCTAAAGTGGCTTATGTGAAGTAAATTGGGGAAAATAATTGAAGCATTATTTTAAATTGAGTTTGTTAATCAATTCACACGTAGTTATTTAAGTTTAATCAGAAA

>Glyma01g24601.3   sequence type=transcript   gene model=Glyma01g24601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTAGATTTGTTTTAAAACAAAAAATGAATGGACAGGATTCATTATTTACTCATGTCTGTATTGTTTTTCTCGAATTGCCACACTGACCCAGCAATTTCTGCTGCATCTTCTTCACATCACAATCACAGAAACATGCCCGTGAGAGTATTGGAGAATACCGCAGCACCTTCTTCTCAGGTTTCAGGTGCCAATTCGGGAAGGAGTTCGTGCCAATCTTGTAGTCTTCTAGGCGTTGGGCAGAAAAGAGATGATGAGAAATGGATGAAACATACTTTGGGATATTGGGATAATGAGAAGGTGCGGTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAGGATACTTACTGAATTATTACGATGGATGATTTATACGGATTGGTTCACGAAGTATGAAGTATGGAATGGCAAGTGCAGGTGAAAAAAGATTCAATAAAGTGTCGTAGATGCATGACTTTGATGATAATCGTTTTATTCATCATCAATGCTGAACATGATCTATTCCAGGCAATCCTCAATGATGTACGATGTCTGTATTTAAAGCTGAAAATAATAGCCATAAAATCCCAATAAGTGTTCACTTTGTTGATCAACTTTGACCAGTGTACAATGTGCTAAGGGTTTATTTTCTGCACCCTAGTACTTTTAGTCTGTTTTATATTCATTTTTATTTTTCTAACCAAAGTAGCAAATGGAAGCCAGCTGCTAAAGTGGCTTATGTGAAGTAAATTGGGGAAAATAATTGAAGCATTATTTTAAATTGAGTTTGTTAATCAATTCACACGTAGTTATTTAAGTTTAATCAGAAA

Coding sequences of Glyma01g24601

Limit To All Plant Sequences

>Glyma01g24601.1   sequence type=CDS   gene model=Glyma01g24601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGGATTCATTATTTACTCATGTCTGTATTGTTTTTCTCGAATTGCCACACTGACCCAGCAATTTCTGCTGCATCTTCTTCACATCACAATCACAGAAACATGCCCGTGAGAGTATTGGAGAATACCGCAGCACCTTCTTCTCAGGTTTCAGGTGCCAATTCGGGAAGGAGTTCGTGCCAATCTTGTAGTCTTCTAGGCGTTGGGCAGCCAGAAATCAGCAACTCTGACTTGATTGAGACCATTGAGTTGGAAAATCTTCTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCACAAAAAGAGATGATGAGAAATGGATGAAACATACTTTGGGATATTGGGATAATGAGAAGGTGCGGTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAG

>Glyma01g24601.2   sequence type=CDS   gene model=Glyma01g24601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGGATTCATTATTTACTCATGTCTGTATTGTTTTTCTCGAATTGCCACACTGACCCAGCAATTTCTGCTGCATCTTCTTCACATCACAATCACAGAAACATGCCCGTGAGAGTATTGGAGAATACCGCAGCACCTTCTTCTCAGGTTTCAGGTGCCAATTCGGGAAGGAGTTCGTGCCAATCTTGTAGTCTTCTAGGCGTTGGGCAGTTGGAAAATCTTCTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCACAAAAAGAGATGATGAGAAATGGATGAAACATACTTTGGGATATTGGGATAATGAGAAGGTGCGGTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAG

>Glyma01g24601.3   sequence type=CDS   gene model=Glyma01g24601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGGATTCATTATTTACTCATGTCTGTATTGTTTTTCTCGAATTGCCACACTGACCCAGCAATTTCTGCTGCATCTTCTTCACATCACAATCACAGAAACATGCCCGTGAGAGTATTGGAGAATACCGCAGCACCTTCTTCTCAGGTTTCAGGTGCCAATTCGGGAAGGAGTTCGTGCCAATCTTGTAGTCTTCTAGGCGTTGGGCAGAAAAGAGATGATGAGAAATGGATGAAACATACTTTGGGATATTGGGATAATGAGAAGGTGCGGTTAGATTACAGGCCGGTGCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAG

Predicted protein sequences of Glyma01g24601

Limit To All Plant Sequences

>Glyma01g24601.1   sequence type=predicted peptide   gene model=Glyma01g24601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRIHYLLMSVLFFSNCHTDPAISAASSSHHNHRNMPVRVLENTAAPSSQVSGANSGRSSCQSCSLLGVGQPEISNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWDNEKVRLDYRPVHMNTLDDEVESFPPKARVY*

>Glyma01g24601.2   sequence type=predicted peptide   gene model=Glyma01g24601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRIHYLLMSVLFFSNCHTDPAISAASSSHHNHRNMPVRVLENTAAPSSQVSGANSGRSSCQSCSLLGVGQLENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWDNEKVRLDYRPVHMNTLDDEVESFPPKARVY*

>Glyma01g24601.3   sequence type=predicted peptide   gene model=Glyma01g24601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRIHYLLMSVLFFSNCHTDPAISAASSSHHNHRNMPVRVLENTAAPSSQVSGANSGRSSCQSCSLLGVGQKRDDEKWMKHTLGYWDNEKVRLDYRPVHMNTLDDEVESFPPKARVY*

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