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Report for Sequence Feature Glyma01g24515

Feature Type:gene_model
Chromosome:Gm01
Start:31889615
stop:31891603
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g24515
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10200AT Annotation by Michelle Graham. TAIR10: TTF-type zinc finger protein with HAT dimerisation domain | chr4:6353172-6355591 FORWARD LENGTH=733 SoyBaseE_val: 5.00E-14ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR11697Panther GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN JGI ISS
PTHR11697:SF16Panther ZINC FINGER PROTEIN JGI ISS
UniRef100_Q7XEL2UniRef Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerisation domain containing protein n=2 Tax=Oryza sativa RepID=Q7XEL2_ORYSJ SoyBaseE_val: 2.00E-11ISS
UniRef100_UPI0002337415UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337415 related cluster n=1 Tax=unknown RepID=UPI0002337415 SoyBaseE_val: 1.00E-28ISS

Expression Patterns of Glyma01g24515
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g24515 not represented in the dataset
Glyma01g24515 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24515 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma01g24515
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g24515
>Glyma01g24515.1   sequence type=CDS   gene model=Glyma01g24515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGGTGGACCAGCAGCTCGCCCAGGCGAGCTGAGACTTGGTCATGAAGTAACTGGCTTGTCCAGGCGAGCTGCTAGTGATGATCCTAAAATAAAAAGTGAAGTTGATTGTTTAGCAAATTATGAGCTTGAAAACTTTGAATTTTTGTTAGGCATGACTATTTGGTATAACATTTTATTTGCAGTTAACTTAGTTAATAAGAACTTACAATCAAAAGATATGTGCATTGACGAAGCTATTGAACAATTAAAAGATTTATTTTTAGAATTAAATATCTTAAAGGAAATTATAGGATTGCAAAATGATAAACCAATTGACATTCTTAATTATATAAAAAGAATAAATTCTTTTCCAAATGCGTATATAGCTTATAGAATAATGTTAACGATACTA
Predicted protein sequences of Glyma01g24515
>Glyma01g24515.1   sequence type=predicted peptide   gene model=Glyma01g24515   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFGGPAARPGELRLGHEVTGLSRRAASDDPKIKSEVDCLANYELENFEFLLGMTIWYNILFAVNLVNKNLQSKDMCIDEAIEQLKDLFLELNILKEIIGLQNDKPIDILNYIKRINSFPNAYIAYRIMLTIL






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