Report for Sequence Feature Glyma01g24430
Feature Type: gene_model
Chromosome: Gm01
Start: 31720085
stop: 31726752
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g24430
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G09320 AT
Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein | chr3:2862142-2864113 REVERSE LENGTH=286
SoyBase E_val: 8.00E-142 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1315
KOG
Predicted DHHC-type Zn-finger protein
JGI ISS
PTHR22883 Panther
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
JGI ISS
PF01529 PFAM
DHHC zinc finger domain
JGI ISS
UniRef100_B9SZZ4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SZZ4_RICCO
SoyBase E_val: 8.00E-157 ISS
UniRef100_I1J6X1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6X1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g24430
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma01g24430 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g099100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g24430
Coding sequences of Glyma01g24430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g24430.1 sequence type=CDS gene model=Glyma01g24430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGCCGCAGTTAAAGCGAAGTCCTCGACGGCGACGACGCTCTCGCTCGCCGTGAGCGTCGTTGTTCTGGCCATCGCCTACATTTACGTGTCCACCGTGTTCGTCTTTATCGACCGCTGGCTCGGCCTCTTCTCCTCACCGGGGATCATGAACGCCGCCGTGTTCTCCGCCCTCGCCGCCGCCTGCGCCCTCACCTACCGCGCTGCCATCTCCACGGATCCGGGTCGGGTCCCAGCCACCTACATGCCCGACGTCGAAGACGCCGAGAGCCCCATCCACGAGATCAAACGCAAGGGTGGAGATTTGCGATATTGCCAAAAGTGTTCTCACTATAAGCCTCCTCGTGCACATCATTGTCGGGTTTGTAAAAGATGTGTTCTACGAATGGATCATCATTGCATTTGGATAAATAACTGCGTCGGTCATGCGAACTATAAAGTATTCTTCATTTTTGTCTTGTATGCTGTAATTGCCTGCATCTACTCCCTGGTCTTACTTGTGGGTAGTCTCGCTTCTGATGGTGTGCAGGATGAAGAGAAAAATAGAAGAAGCTCATTCCGAACTGTATATGTTGTTTCTGGGCTCTTGCTGGTCCCCTTATCGATAGCATTATGTGTGCTTTTAGGTTGGCATATCTATCTCATGCTACATAACAAGACGACGATAGAGTATCATGAAGGAGTGAGAGCTTTGTGGCTTGCAGAGAAAGGTGGGAGTATCTATAAACATCCATATGACCTTGGCCCATATGAGAATTTGACATCTGTTTTGGGACCGAATATCCTTAGCTGGCTGTGGCCTACTGCAAACCATATAGGTTCTGGACTTAGGTATCGCACCATCTATGATCTCCCAAAAGGTGCTTCGACGTCCAAATGA
Predicted protein sequences of Glyma01g24430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g24430.1 sequence type=predicted peptide gene model=Glyma01g24430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAAVKAKSSTATTLSLAVSVVVLAIAYIYVSTVFVFIDRWLGLFSSPGIMNAAVFSALAAACALTYRAAISTDPGRVPATYMPDVEDAESPIHEIKRKGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFIFVLYAVIACIYSLVLLVGSLASDGVQDEEKNRRSSFRTVYVVSGLLLVPLSIALCVLLGWHIYLMLHNKTTIEYHEGVRALWLAEKGGSIYKHPYDLGPYENLTSVLGPNILSWLWPTANHIGSGLRYRTIYDLPKGASTSK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
