SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02230 | AT | Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:449132-450507 FORWARD LENGTH=280 | SoyBase | E_val: 5.00E-137 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG3109 | KOG | Haloacid dehalogenase-like hydrolase | JGI | ISS | |
| PTHR18901 | Panther | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 | JGI | ISS | |
| UniRef100_B6TKR3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Catalytic/ hydrolase n=2 Tax=Zea mays RepID=B6TKR3_MAIZE | SoyBase | E_val: 5.00E-138 | ISS |
| UniRef100_I1J6W9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6W9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g24360 not represented in the dataset |
Glyma01g24360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g098700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g24360.1 sequence type=CDS gene model=Glyma01g24360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTCGAGGACCGCTTCAGACACCAGGTTCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGACACTTTGTATCCTCTCAAATCTGGTCTGGCAAAATCATGTCTCCAAAATATTAAACACTACATGGTTGAGAAGCTTGGCATAGACCCTAGCAAAATTGATGACCTGTCCAACCTCCTTTACAAGAATTATGGAACTACTATGGCTGGTCTAAGGGCAATTGGATATGACTTTGACTATGATGAATATCATAGCTTTGTTCATGGGAGATTACCTTATGAGAACCTAAAACCAGACCCAGTTCTGAGGAACCTGTTGCTGAGCCTACCCTATAGGAAACTTATCTTCACAAACGCAGACAAAGTCCACGCGGCTAAGGCGCTTAGCAGGCTTGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCTATCCACAAGAGCACTGTTTCTGATGATGAAGATGATATTGAGTTTGTGGGTTCAAGGACCACCAATCCTACCACTTGTAATGGTTCAGGCACCTCTCAAATCTTTGACATTATAGGGCATTTTGCTCAGCCCAATCCCGGTGCAGTCCTGCCAAAGACACCAATTGTTTGCAAGCCATCAGAAAATGCCATTGAATTGGCCATCAAGATAGCCAACCTTAACCCACAAAGAACTTTGTTCTTTGAGGACAGTACCCGCAACATACAAGCTGGAAAACGTGTGGGGCTTCACACTGTGCTGGTTGGTACATCACAAAGATGTAAAGGAGCAGATTATGCCTTGGAAAGCATTCACAACCTTAGGGAGGCTGTGCCTGAACTATGGGAGGCTGATATAAAATCAGAAGTTGCATACCCTGGAAAGCTAGCTGTGGAGACATCTGTCACTGCTTGA
>Glyma01g24360.1 sequence type=predicted peptide gene model=Glyma01g24360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFEDRFRHQVQRPKYDCLLFDLDDTLYPLKSGLAKSCLQNIKHYMVEKLGIDPSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNADKVHAAKALSRLGLEDCFEGIICFETLNPIHKSTVSDDEDDIEFVGSRTTNPTTCNGSGTSQIFDIIGHFAQPNPGAVLPKTPIVCKPSENAIELAIKIANLNPQRTLFFEDSTRNIQAGKRVGLHTVLVGTSQRCKGADYALESIHNLREAVPELWEADIKSEVAYPGKLAVETSVTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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