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Report for Sequence Feature Glyma01g24360

Feature Type:gene_model
Chromosome:Gm01
Start:31583730
stop:31587255
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g24360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02230AT Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:449132-450507 FORWARD LENGTH=280 SoyBaseE_val: 5.00E-137ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG3109 KOG Haloacid dehalogenase-like hydrolase JGI ISS
PTHR18901Panther 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 JGI ISS
UniRef100_B6TKR3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic/ hydrolase n=2 Tax=Zea mays RepID=B6TKR3_MAIZE SoyBaseE_val: 5.00E-138ISS
UniRef100_I1J6W9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6W9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g24360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g098700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g24360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g24360
>Glyma01g24360.1   sequence type=CDS   gene model=Glyma01g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTCGAGGACCGCTTCAGACACCAGGTTCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGACACTTTGTATCCTCTCAAATCTGGTCTGGCAAAATCATGTCTCCAAAATATTAAACACTACATGGTTGAGAAGCTTGGCATAGACCCTAGCAAAATTGATGACCTGTCCAACCTCCTTTACAAGAATTATGGAACTACTATGGCTGGTCTAAGGGCAATTGGATATGACTTTGACTATGATGAATATCATAGCTTTGTTCATGGGAGATTACCTTATGAGAACCTAAAACCAGACCCAGTTCTGAGGAACCTGTTGCTGAGCCTACCCTATAGGAAACTTATCTTCACAAACGCAGACAAAGTCCACGCGGCTAAGGCGCTTAGCAGGCTTGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCTATCCACAAGAGCACTGTTTCTGATGATGAAGATGATATTGAGTTTGTGGGTTCAAGGACCACCAATCCTACCACTTGTAATGGTTCAGGCACCTCTCAAATCTTTGACATTATAGGGCATTTTGCTCAGCCCAATCCCGGTGCAGTCCTGCCAAAGACACCAATTGTTTGCAAGCCATCAGAAAATGCCATTGAATTGGCCATCAAGATAGCCAACCTTAACCCACAAAGAACTTTGTTCTTTGAGGACAGTACCCGCAACATACAAGCTGGAAAACGTGTGGGGCTTCACACTGTGCTGGTTGGTACATCACAAAGATGTAAAGGAGCAGATTATGCCTTGGAAAGCATTCACAACCTTAGGGAGGCTGTGCCTGAACTATGGGAGGCTGATATAAAATCAGAAGTTGCATACCCTGGAAAGCTAGCTGTGGAGACATCTGTCACTGCTTGA
Predicted protein sequences of Glyma01g24360
>Glyma01g24360.1   sequence type=predicted peptide   gene model=Glyma01g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFEDRFRHQVQRPKYDCLLFDLDDTLYPLKSGLAKSCLQNIKHYMVEKLGIDPSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNADKVHAAKALSRLGLEDCFEGIICFETLNPIHKSTVSDDEDDIEFVGSRTTNPTTCNGSGTSQIFDIIGHFAQPNPGAVLPKTPIVCKPSENAIELAIKIANLNPQRTLFFEDSTRNIQAGKRVGLHTVLVGTSQRCKGADYALESIHNLREAVPELWEADIKSEVAYPGKLAVETSVTA*






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