Glyma01g24115 - SoyBase

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Report for Sequence Feature Glyma01g24115

Feature Type:	gene_model
Chromosome:	Gm01
Start:	31363013
stop:	31365202
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g24115

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_B9N5V7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N5V7_POPTR	SoyBase	E_val: 6.00E-08	ISS

Expression Patterns of Glyma01g24115

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g24115 not represented in the dataset	Glyma01g24115 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24115 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g098200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g24115

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g24115

Limit To All Plant Sequences

>Glyma01g24115.2   sequence type=transcript   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGACAATGGAAGAAGGAGTTTATATTGATTCCTAAAACTCATTATATTAAAGTGTTAATCATACACACAATATGGGACCGAAGGACAATGTTGCAGATAGCGATCAACTAAAATTTCAGATACGAGAAAAAGTGATTGAACGGGCAAGGATGGTTTTTAGGCTGAATGATTTGGAGAACTACAATCTTTATAGACGCAATTATGGTATTGCTAGGAAAATGGACATCCTGAGGCATTTGCATCTGGCACTAGACAATTTCTCTTGTGCAAATAAACCACATAAAGGGAGAGCTATCAAGTCATGCACAACAGAAGAGCTAGACAATAAGAAGTTGAATTATATGATGCTACATGGGACTAGAAACTTGATTGAGGAAAAGAAGCTATTAAGAAATAAAAATATGTGCCACAAGACAGATGATGCTTCAAGTTCACGTCTTCTAGAGCTCATGAAGAATGTACAGATGAAATATAGTTCTTACAATCATCACTGTAAACAAAAAAATTGTGATAAACTCCATAAAGAAATCAAACGTTTTGAAGTGACAAGGAAAAAGTCAGCACAATTAAAGCAAGGCATCAGAAATCATGTGAAGATTATGAGTGATGAGTTGATGGAGATGAGGAAGAAAAAGCATGCACTTGAGACCAAAATTAAGCATGTTAATAGAGAAATAGAGGTCATAAATGAAGAAATTATAAGGTCCTTTCAGAAGCACTTGAAAGGTAGATTTTGCAGAAATGATGCATATCTTTTTATGCTTCAGGAGATGAAAAATAAAGGATACTGGGTCCTCAATTCTATTGACTTGGGATATGATCAGGCCTTTGGCTTTCGTGACATCTATTCGAAGAAGTTTTTATGTTATAATATAAGCACTTTGAATGACGATGACCTGTCTTGTAATAAAGACTTCTCCAAATAGGTGTCAGAAATATGAAGTTATCGATAGGTTTTCCGAAACTCTGTATGTTATAATATATTTTTGAAATATCATATTATACAATTTATACAAAATTATTTTTTTCTCTCTAT

>Glyma01g24115.3   sequence type=transcript   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAAACAATGATCTTTTATTAATCTCATACTATGTATCCATATAATTTCTTCGATGTCTTTATATTTACTTATTTGTACTTTCTAACCGAAATGGAACAGTTGATAATAAGGTTGATGCATAATACAGAATCATACACACAATATGGGACCGAAGGACAATGTTGCAGATAGCGATCAACTAAAATTTCAGATACGAGAAAAAGTGATTGAACGGGCAAGGATGGTTTTTAGGCTGAATGATTTGGAGAACTACAATCTTTATAGACGCAATTATGGTATTGCTAGGAAAATGGACATCCTGAGGCATTTGCATCTGGCACTAGACAATTTCTCTTGTGCAAATAAACCACATAAAGGGAGAGCTATCAAGTCATGCACAACAGAAGAGCTAGACAATAAGAAGTTGAATTATATGATGCTACATGGGACTAGAAACTTGATTGAGGAAAAGAAGCTATTAAGAAATAAAAATATGTGCCACAAGACAGATGATGCTTCAAGTTCACGTCTTCTAGAGCTCATGAAGAATGTACAGATGAAATATAGTTCTTACAATCATCACTGTAAACAAAAAAATTGTGATAAACTCCATAAAGAAATCAAACGTTTTGAAGTGACAAGGAAAAAGTCAGCACAATTAAAGCAAGGCATCAGAAATCATGTGAAGATTATGAGTGATGAGTTGATGGAGATGAGGAAGAAAAAGCATGCACTTGAGACCAAAATTAAGCATGTTAATAGAGAAATAGAGGTCATAAATGAAGAAATTATAAGGTCCTTTCAGAAGCACTTGAAAGGTAGATTTTGCAGAAATGATGCATATCTTTTTATGCTTCAGGAGATGAAAAATAAAGGATACTGGGTCCTCAATTCTATTGACTTGGGATATGATCAGGCCTTTGGCTTTCGTGACATCTATTCGAAGAAGTTTTTATGTTATAATATAAGCACTTTGAATGACGATGACCTGTCTTGTAATAAAGACTTCTCCAAATAGGTGTCAGAAATATGAAGTTATCGATAGGTTTTCCGAAACTCTGTATGTTATAATATATTTTTGAAATATCATATTATACAATTTATACAAAATTATTTTTTTCTCTCTAT

>Glyma01g24115.4   sequence type=transcript   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGAGAAGTGCTTGGAAGAAATAGACAACTTCATCACTTGCGAATCATACACACAATATGGGACCGAAGGACAATGTTGCAGATAGCGATCAACTAAAATTTCAGATACGAGAAAAAGTGATTGAACGGGCAAGGATGGTTTTTAGGCTGAATGATTTGGAGAACTACAATCTTTATAGACGCAATTATGGTATTGCTAGGAAAATGGACATCCTGAGGCATTTGCATCTGGCACTAGACAATTTCTCTTGTGCAAATAAACCACATAAAGGGAGAGCTATCAAGTCATGCACAACAGAAGAGCTAGACAATAAGGTACAGATGAAATATAGTTCTTACAATCATCACTGTAAACAAAAAAATTGTGATAAACTCCATAAAGAAATCAAACGTTTTGAAGTGACAAGGAAAAAGTCAGCACAATTAAAGCAAGGCATCAGAAATCATGTGAAGATTATGAGTGATGAGTTGATGGAGATGAGGAAGAAAAAGCATGCACTTGAGACCAAAATTAAGCATGTTAATAGAGAAATAGAGGTCATAAATGAAGAAATTATAAGGTCCTTTCAGAAGCACTTGAAAGGTAGATTTTGCAGAAATGATGCATATCTTTTTATGCTTCAGGAGATGAAAAATAAAGGATACTGGGTCCTCAATTCTATTGACTTGGGATATGATCAGGCCTTTGGCTTTCGTGACATCTATTCGAAGAAGTTTTTATGTTATAATATAAGCACTTTGAATGACGATGACCTGTCTTGTAATAAAGACTTCTCCAAATAGGTGTCAGAAATATGAAGTTATCGATAGGTTTTCCGAAACTCTGTATGTTATAATATATTTTTGAAATATCATATTATACAATTTATACAAAATTATTTTTTTCTCTCTAT

Coding sequences of Glyma01g24115

Limit To All Plant Sequences

>Glyma01g24115.1   sequence type=CDS   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCGAAGGACAATGTTGCAGATAGCGATCAACTAAAATTTCAGATACGAGAAAAAGTGATTGAACGGGCAAGGATGGTTTTTAGGCTGAATGATTTGGAGAACTACAATCTTTATAGACGCAATTATGGTATTGCTAGGAAAATGGACATCCTGAGGCATTTGCATCTGGCACTAGACAATTTCTCTTGTGCAAATAAACCACATAAAGGGAGAGCTATCAAGTCATGCACAACAGAAGAGCTAGACAATAAGAAGTTGAATTATATGATGCTACATGGGACTAGAAACTTGATTGAGGAAAAGAAGCTATTAAGAAATAAAAATATGTGCCACAAGACAGATGATGCTTCAAGTTCACGTCTTCTAGAGCTCATGAAGAATGTACAGATGAAATATAGTTCTTACAATCATCACTGTAAACAAAAAAATTGTGATAAACTCCATAAAGAAATCAAACGTTTTGAAGTGACAAGGAAAAAGTCAGCACAATTAAAGCAAGGCATCAGAAATCATGTGAAGATTATGAGTGATGAGTTGATGGAGATGAGGAAGAAAAAGCATGCACTTGAGACCAAAATTAAGCATGTTAATAGAGAAATAGAGGTCATAAATGAAGAAATTATAAGGTCCTTTCAGAAGCACTTGAAAGGTAGATTTTGCAGAAATGATGCATATCTTTTTATGCTTCAGGAGATGAAAAATAAAGGATACTGGGTCCTCAATTCTATTGACTTGGGATATGATCAGGCCTTTGGCTTTCGTGACATCTATTCGAAGAAGTTTTTATGTTATAATATAAGCACTTTGAATGACGATGACCTGTCTTGTAATAAAGACTTCTCCAAATAG

>Glyma01g24115.2   sequence type=CDS   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCGAAGGACAATGTTGCAGATAGCGATCAACTAAAATTTCAGATACGAGAAAAAGTGATTGAACGGGCAAGGATGGTTTTTAGGCTGAATGATTTGGAGAACTACAATCTTTATAGACGCAATTATGGTATTGCTAGGAAAATGGACATCCTGAGGCATTTGCATCTGGCACTAGACAATTTCTCTTGTGCAAATAAACCACATAAAGGGAGAGCTATCAAGTCATGCACAACAGAAGAGCTAGACAATAAGAAGTTGAATTATATGATGCTACATGGGACTAGAAACTTGATTGAGGAAAAGAAGCTATTAAGAAATAAAAATATGTGCCACAAGACAGATGATGCTTCAAGTTCACGTCTTCTAGAGCTCATGAAGAATGTACAGATGAAATATAGTTCTTACAATCATCACTGTAAACAAAAAAATTGTGATAAACTCCATAAAGAAATCAAACGTTTTGAAGTGACAAGGAAAAAGTCAGCACAATTAAAGCAAGGCATCAGAAATCATGTGAAGATTATGAGTGATGAGTTGATGGAGATGAGGAAGAAAAAGCATGCACTTGAGACCAAAATTAAGCATGTTAATAGAGAAATAGAGGTCATAAATGAAGAAATTATAAGGTCCTTTCAGAAGCACTTGAAAGGTAGATTTTGCAGAAATGATGCATATCTTTTTATGCTTCAGGAGATGAAAAATAAAGGATACTGGGTCCTCAATTCTATTGACTTGGGATATGATCAGGCCTTTGGCTTTCGTGACATCTATTCGAAGAAGTTTTTATGTTATAATATAAGCACTTTGAATGACGATGACCTGTCTTGTAATAAAGACTTCTCCAAATAG

>Glyma01g24115.3   sequence type=CDS   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCGAAGGACAATGTTGCAGATAGCGATCAACTAAAATTTCAGATACGAGAAAAAGTGATTGAACGGGCAAGGATGGTTTTTAGGCTGAATGATTTGGAGAACTACAATCTTTATAGACGCAATTATGGTATTGCTAGGAAAATGGACATCCTGAGGCATTTGCATCTGGCACTAGACAATTTCTCTTGTGCAAATAAACCACATAAAGGGAGAGCTATCAAGTCATGCACAACAGAAGAGCTAGACAATAAGAAGTTGAATTATATGATGCTACATGGGACTAGAAACTTGATTGAGGAAAAGAAGCTATTAAGAAATAAAAATATGTGCCACAAGACAGATGATGCTTCAAGTTCACGTCTTCTAGAGCTCATGAAGAATGTACAGATGAAATATAGTTCTTACAATCATCACTGTAAACAAAAAAATTGTGATAAACTCCATAAAGAAATCAAACGTTTTGAAGTGACAAGGAAAAAGTCAGCACAATTAAAGCAAGGCATCAGAAATCATGTGAAGATTATGAGTGATGAGTTGATGGAGATGAGGAAGAAAAAGCATGCACTTGAGACCAAAATTAAGCATGTTAATAGAGAAATAGAGGTCATAAATGAAGAAATTATAAGGTCCTTTCAGAAGCACTTGAAAGGTAGATTTTGCAGAAATGATGCATATCTTTTTATGCTTCAGGAGATGAAAAATAAAGGATACTGGGTCCTCAATTCTATTGACTTGGGATATGATCAGGCCTTTGGCTTTCGTGACATCTATTCGAAGAAGTTTTTATGTTATAATATAAGCACTTTGAATGACGATGACCTGTCTTGTAATAAAGACTTCTCCAAATAG

>Glyma01g24115.4   sequence type=CDS   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCGAAGGACAATGTTGCAGATAGCGATCAACTAAAATTTCAGATACGAGAAAAAGTGATTGAACGGGCAAGGATGGTTTTTAGGCTGAATGATTTGGAGAACTACAATCTTTATAGACGCAATTATGGTATTGCTAGGAAAATGGACATCCTGAGGCATTTGCATCTGGCACTAGACAATTTCTCTTGTGCAAATAAACCACATAAAGGGAGAGCTATCAAGTCATGCACAACAGAAGAGCTAGACAATAAGGTACAGATGAAATATAGTTCTTACAATCATCACTGTAAACAAAAAAATTGTGATAAACTCCATAAAGAAATCAAACGTTTTGAAGTGACAAGGAAAAAGTCAGCACAATTAAAGCAAGGCATCAGAAATCATGTGAAGATTATGAGTGATGAGTTGATGGAGATGAGGAAGAAAAAGCATGCACTTGAGACCAAAATTAAGCATGTTAATAGAGAAATAGAGGTCATAAATGAAGAAATTATAAGGTCCTTTCAGAAGCACTTGAAAGGTAGATTTTGCAGAAATGATGCATATCTTTTTATGCTTCAGGAGATGAAAAATAAAGGATACTGGGTCCTCAATTCTATTGACTTGGGATATGATCAGGCCTTTGGCTTTCGTGACATCTATTCGAAGAAGTTTTTATGTTATAATATAAGCACTTTGAATGACGATGACCTGTCTTGTAATAAAGACTTCTCCAAATAG

Predicted protein sequences of Glyma01g24115

Limit To All Plant Sequences

>Glyma01g24115.1   sequence type=predicted peptide   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPKDNVADSDQLKFQIREKVIERARMVFRLNDLENYNLYRRNYGIARKMDILRHLHLALDNFSCANKPHKGRAIKSCTTEELDNKKLNYMMLHGTRNLIEEKKLLRNKNMCHKTDDASSSRLLELMKNVQMKYSSYNHHCKQKNCDKLHKEIKRFEVTRKKSAQLKQGIRNHVKIMSDELMEMRKKKHALETKIKHVNREIEVINEEIIRSFQKHLKGRFCRNDAYLFMLQEMKNKGYWVLNSIDLGYDQAFGFRDIYSKKFLCYNISTLNDDDLSCNKDFSK*

>Glyma01g24115.2   sequence type=predicted peptide   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPKDNVADSDQLKFQIREKVIERARMVFRLNDLENYNLYRRNYGIARKMDILRHLHLALDNFSCANKPHKGRAIKSCTTEELDNKKLNYMMLHGTRNLIEEKKLLRNKNMCHKTDDASSSRLLELMKNVQMKYSSYNHHCKQKNCDKLHKEIKRFEVTRKKSAQLKQGIRNHVKIMSDELMEMRKKKHALETKIKHVNREIEVINEEIIRSFQKHLKGRFCRNDAYLFMLQEMKNKGYWVLNSIDLGYDQAFGFRDIYSKKFLCYNISTLNDDDLSCNKDFSK*

>Glyma01g24115.3   sequence type=predicted peptide   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPKDNVADSDQLKFQIREKVIERARMVFRLNDLENYNLYRRNYGIARKMDILRHLHLALDNFSCANKPHKGRAIKSCTTEELDNKKLNYMMLHGTRNLIEEKKLLRNKNMCHKTDDASSSRLLELMKNVQMKYSSYNHHCKQKNCDKLHKEIKRFEVTRKKSAQLKQGIRNHVKIMSDELMEMRKKKHALETKIKHVNREIEVINEEIIRSFQKHLKGRFCRNDAYLFMLQEMKNKGYWVLNSIDLGYDQAFGFRDIYSKKFLCYNISTLNDDDLSCNKDFSK*

>Glyma01g24115.4   sequence type=predicted peptide   gene model=Glyma01g24115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPKDNVADSDQLKFQIREKVIERARMVFRLNDLENYNLYRRNYGIARKMDILRHLHLALDNFSCANKPHKGRAIKSCTTEELDNKVQMKYSSYNHHCKQKNCDKLHKEIKRFEVTRKKSAQLKQGIRNHVKIMSDELMEMRKKKHALETKIKHVNREIEVINEEIIRSFQKHLKGRFCRNDAYLFMLQEMKNKGYWVLNSIDLGYDQAFGFRDIYSKKFLCYNISTLNDDDLSCNKDFSK*

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