Glyma01g24100 - SoyBase

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Report for Sequence Feature Glyma01g24100

Feature Type:	gene_model
Chromosome:	Gm01
Start:	31272680
stop:	31276347
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g24100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65670	AT	Annotation by Michelle Graham. TAIR10: indole-3-acetic acid inducible 9 \| chr5:26254463-26256134 FORWARD LENGTH=336	SoyBase	E_val: 2.00E-142	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_G7LHT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Indoleacetic acid-induced-like protein n=2 Tax=Medicago truncatula RepID=G7LHT1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KX40	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KX40_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g24100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g24100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g098000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g24100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g24100

Limit To All Plant Sequences

>Glyma01g24100.2   sequence type=CDS   gene model=Glyma01g24100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCGCCATTGCTGGTTACCGAAGATGAAGGGCAGTGCCATGCCTCGATGGTAGCATCTGCATCTTCACCATCCCTGAACTGTTTCTCCCTAAATGAGGCCGGATTTAAAGAATGCAATTACCTGGGATTGTCAGATTGCTCTTCGGTGGACAGTTCTACTGTCCCGAATTTGTCTGATGAGAAAAAGGAGAATCTGAATTTGAAGGCTACTGAGTTGAGGCTTGGCCTTCCGGGATCCCAGTCACCTGAAAGGGAGACAGAACTTTTCTCGTTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTGCTCATTGTCTCAAAAAACTGTGGTCTCGGGCAACAAAAGAGGTTTTGCTGACACAATGGACCCTGAGGTGAAAACGGCAAATGGAACTGGTCATAACCATACATCAGGAGCTTCTATCAGTGGCAGTGCACCGGTTGCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAATAATGATGAAGTAGATGGAAAACCGGGTGCAGCAGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTAGATCTAAGAAATTATACAATGTACCAGGAACTGTCTTCTGCCCTTGAGAAAATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTCGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGACTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAGGAGCAGGTGCTAG

Predicted protein sequences of Glyma01g24100

Limit To All Plant Sequences

>Glyma01g24100.2   sequence type=predicted peptide   gene model=Glyma01g24100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPPLLVTEDEGQCHASMVASASSPSLNCFSLNEAGFKECNYLGLSDCSSVDSSTVPNLSDEKKENLNLKATELRLGLPGSQSPERETELFSLSSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADTMDPEVKTANGTGHNHTSGASISGSAPVAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGAAALFVKVSMDGAPYLRKVDLRNYTMYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRC*

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