Glyma01g23830 - SoyBase

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Report for Sequence Feature Glyma01g23830

Feature Type:	gene_model
Chromosome:	Gm01
Start:	30834279
stop:	30837915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g23830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37880	AT	Annotation by Michelle Graham. TAIR10: LisH/CRA/RING-U-box domains-containing protein \| chr4:17810183-17811349 FORWARD LENGTH=388	SoyBase	E_val: 1.00E-163	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2817	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR12170	Panther	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	JGI		ISS
PTHR12170:SF3	Panther	gb def: hypothetical orf, ydr255cp [saccharomyces cerevisiae]	JGI		ISS
PF10607	PFAM	Ran binding protein in the microtubule-organising centre	JGI		ISS
UniRef100_G7LHS6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RMD5-like protein n=1 Tax=Medicago truncatula RepID=G7LHS6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J6W1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6W1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g23830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g23830

Paralog	Evidence	Comments
Glyma08g37050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g23830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g097700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g23830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g23830

Limit To All Plant Sequences

>Glyma01g23830.1   sequence type=CDS   gene model=Glyma01g23830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTGAGTACTATAAAAGATGCTTTTGACCGTGTTACTAAGAAGCAAAAGTTATCTTGTTCCAAGACTCAAGAAGCAATTGATCAGATCAGACAGGAAATTGAGAGTGTTTTAGACACACTGCAGTCAGCGAATAACACTGACCATGAACTTGATTATAAAACTGTCCTGAATGAGCTTAAGGCCAGTTTTCTTTTAATTGCTCCACTTAGTCAAATGGAAGGTACACAGAAGGAGCTAAATGTAGCACTCACCAAGTATGGGAAGCTTCTTGAGAAACATTTCAACCCTGATATATCCAAGGCTTACAGAAATATCGACATTGATAGACATACATTAAACCAAATAATTGCTAACCATTTTTATCACCAGGGCCTTTTTGAGATAGGGGACCATTTTATGAGTGTGGTTGGAGAGCCTGAATCCGCAGCCATTATGAAATTTCCGTTCGTGGAAATGTATCAAATACTTGAAGCCATGCAGAATCAGAACCTAGAGCCAGCCCTCAACTGGGCTTCCACTAATGGTGACAAACTTGCTCAAAGTGGATCTGATATTGTGTTGAAACTTCACTCAATGCAATTTGTGAAAGTACTTCAAAATGGAAGTAGAGAGGAAGCTCTTCATTATGCTCGAATGCACCTTTCTCCTTTTGCTACCAGTCACATGACCGATATTCAGAAACTTATGGGCTGTCTTCTATGGACGGGAAAGCTTGATCGTTCTCCTTACCATGCATTACTATCACCATCTAACTGGGATAAGTTGGCTGAGGAACTTAAAAGGCAGTTCTGCAATCTTTTGGGACAGTCGTATAATAGTCCATTGAGCGTGACTGTAGCAGCAGGGGTCCAGGTTTTGCCACCACTCCTCAAATTTATGAATGTCATGGCAGGGAAGAAGAATGAATGGCAGTCTATGAACCAGTTACCGGTGCCGGTTGAGTTGGACCGTGAGTTCCAGTTCCATTCTATTTTTGTTTGTCCTGTCTCCAAGGAACAAGCAACCGAGGATAACCCTCCGATGTTAATGTCCTGTGGCCATGTCCTCTGCAAGCAGTCTATCTTGAAGATGTCCAAGAATAGCACAAAAGTGTTTAAGTGCCCATATTGTCCCTTTGATATTGATGCAGCACAGTGCAAGCAGCTATATTTCTGA

Predicted protein sequences of Glyma01g23830

Limit To All Plant Sequences

>Glyma01g23830.1   sequence type=predicted peptide   gene model=Glyma01g23830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSTIKDAFDRVTKKQKLSCSKTQEAIDQIRQEIESVLDTLQSANNTDHELDYKTVLNELKASFLLIAPLSQMEGTQKELNVALTKYGKLLEKHFNPDISKAYRNIDIDRHTLNQIIANHFYHQGLFEIGDHFMSVVGEPESAAIMKFPFVEMYQILEAMQNQNLEPALNWASTNGDKLAQSGSDIVLKLHSMQFVKVLQNGSREEALHYARMHLSPFATSHMTDIQKLMGCLLWTGKLDRSPYHALLSPSNWDKLAEELKRQFCNLLGQSYNSPLSVTVAAGVQVLPPLLKFMNVMAGKKNEWQSMNQLPVPVELDREFQFHSIFVCPVSKEQATEDNPPMLMSCGHVLCKQSILKMSKNSTKVFKCPYCPFDIDAAQCKQLYF*

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