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Report for Sequence Feature Glyma01g23790

Feature Type:gene_model
Chromosome:Gm01
Start:30725260
stop:30734274
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g23790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37870AT Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxykinase 1 | chr4:17802974-17806332 REVERSE LENGTH=671 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0009817GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004611GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxykinase activity SoyBaseN/AISS
GO:0004612GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxykinase (ATP) activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0017076GO-mf Annotation by Michelle Graham. GO Molecular Function: purine nucleotide binding SoyBaseN/AISS
PTHR11699Panther ALDEHYDE DEHYDROGENASE-RELATED JGI ISS
PTHR11699:SF22Panther ALDEHYDE DEHYDROGENASE JGI ISS
PF01293PFAM Phosphoenolpyruvate carboxykinase JGI ISS
UniRef100_I1J6V7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J6V7_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q94LX7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxykinase n=1 Tax=Flaveria pringlei RepID=Q94LX7_FLAPR SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g23790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g23790
ParalogEvidenceComments
Glyma08g36820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g23790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g097400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g23790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g23790
>Glyma01g23790.1   sequence type=CDS   gene model=Glyma01g23790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGACAAGTGACAACGCTGGAAACGGAAATGGGCTGGCAAAGATTCAACAACTTGGTGACAATGAAGAAGGTCGTCCAACGGTGAAGGCTCAAACCATTGATGAGCTTCACTCTTTGCAGAAGAAGAAATCTGCACCTTCCACTCCCAAGGGCTCTCTGCCTACGTCTGCCAGCGTTTTTACCGAGGAAGAACGCAACAAACAGCAGCTTGAGTCCATCAGTGCATCTTTGGCGTCACTAACAAGAGAAAGTGGACCAAAGGTAGTGAAAGGGGATCCAGCAGCTAGGAAATACGAAGCCTCAAGGGTTGAACACGTGCCGCACCAAATTCTCACACCTACCATTGCTGTCAGTGACAGTGCCTTGAAGTTTACACATGTTCTCTATAACCTCTCCCCAGCAGAACTTTATGAACAAGCGATCAAGTATGAGAAAGGATCGTTCATTACTTCCACTGGGGCATTGGCTACGCTTTCTGGGGCCAAGACGGGTCGGTGTCCCAGAGACAAGCGCGTGGTGAAAGATGAAGTTACTGAGAATGAACTTTGGTGGGGAAAGGGTTCTCCTAACATCGAGATGGACGAGCACAGTTTCATGGTGAATAGAGAAAGAGCCGTTGATTATTTGAACTCTTTGGACAAGGTCTTTGTGAATGACCAATTCTTGAACTGGGACCCAGAGAACAAAATCAAAGTTAGGATTGTCTCTGCCAGAGCTTACCATTCCTTGTTTATGCACAACATGTGCATTCGACCAACTACCGAAGAGCTTGAGAATTTTGGCACACCAGACTTCACTATTTATAATGCTGGACAGTTTCCTTGCAATCGTTACACTCACTACATGACATCTTCTACTAGCATTGATCTTAGTCTTGCAAGGAAGGAAATGGTGATCCTTGGGACACAGTATGCAGGGGAAATGAAGAAAGGTCTCTTTAGTGTCATGCACTATCTCATGCCCAAGAGGAAAATCCTCTCCCTACACTCTGGCTGCAACATGGGCAAAGGTGGAGATGTTGCTCTCTTTTTTGGACTCTCAGGTACTGGAAAGACCACTCTGTCCACGGATCATAATAGGTATTTAATTGGAGATGATGAACACTGTTGGAGTGAGAGTGGTGTCTCAAACATTGAAGGTGGTTGCTATGCCAAATGCATTGATCTCTCAAGGGAGAATGAACCTGACATCTGGAACGCCATCAAATTTGGGACAGTCTTGGAGAATGTTGTTTTTGATGAGCATTTTCGAGAAGTTGATTACACAGACAAATCAGTTACAGAAAATACTCGTGCAGCTTATCCAATTGACTACATTCCAAATGTGAAGTTACCATGTGTTGGTCCTCACCCTAAGAATGTGATCCTTTTGGCATGTGATGCATTTGGTGTGCTTCCACCTGTGAGTAAGCTAAGCCTGTCGCAGACCATGTACCATTTCATCAGTGGATACACAGCTTTGGTGGCTGGCACAGAAGAGGGCATAAAGGAGCCACAGGCAACATTTTCAGCTTGTTTTGGTGCAGCCTTTATAATGCTACACCCTACAAAGTATGCAGCCATGCTTGCTGAAAAGATGCAGAATCATGGTGCTACTGGATGGCTTGTTAACACAGGATGGTCTGGTGGAAGCTATGGTTGTGGAAGTCGTATTAAACTATCTTATACAAGAAAAATTATTGATGCTATTCACTCTGGAAGCCTCTTGGATGTTGAGTACAAGAAGACTGAGATTTTTGGACTTGAGATCCCCACTGAAGTGGAGGGAGTCCCCTCGGAAATTCTAGAACCTGAGAACACGTGGTCAGACAAACAAGCCTACAAGGAGACACTATTGAAGCTGGCTGGATTGTTCAAGAACAATTTTGAAACATTCACCTATGGAGAGAACAACCAAGTGACAAAGGAGATTCTTGCTGCTGGACCAATCATTCATGATGCTTAA
Predicted protein sequences of Glyma01g23790
>Glyma01g23790.1   sequence type=predicted peptide   gene model=Glyma01g23790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTSDNAGNGNGLAKIQQLGDNEEGRPTVKAQTIDELHSLQKKKSAPSTPKGSLPTSASVFTEEERNKQQLESISASLASLTRESGPKVVKGDPAARKYEASRVEHVPHQILTPTIAVSDSALKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRCPRDKRVVKDEVTENELWWGKGSPNIEMDEHSFMVNRERAVDYLNSLDKVFVNDQFLNWDPENKIKVRIVSARAYHSLFMHNMCIRPTTEELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLSLARKEMVILGTQYAGEMKKGLFSVMHYLMPKRKILSLHSGCNMGKGGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWSESGVSNIEGGCYAKCIDLSRENEPDIWNAIKFGTVLENVVFDEHFREVDYTDKSVTENTRAAYPIDYIPNVKLPCVGPHPKNVILLACDAFGVLPPVSKLSLSQTMYHFISGYTALVAGTEEGIKEPQATFSACFGAAFIMLHPTKYAAMLAEKMQNHGATGWLVNTGWSGGSYGCGSRIKLSYTRKIIDAIHSGSLLDVEYKKTEIFGLEIPTEVEGVPSEILEPENTWSDKQAYKETLLKLAGLFKNNFETFTYGENNQVTKEILAAGPIIHDA*






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