Glyma01g23726 - SoyBase

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Report for Sequence Feature Glyma01g23726

Feature Type:	gene_model
Chromosome:	Gm01
Start:	30704827
stop:	30710568
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g23726

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22720	AT	Annotation by Michelle Graham. TAIR10: SPT2 chromatin protein \| chr2:9658182-9660532 FORWARD LENGTH=569	SoyBase	E_val: 2.00E-39	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR22691	Panther	YEAST SPT2-RELATED	JGI		ISS
PTHR22691:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF08243	PFAM	SPT2 chromatin protein	JGI		ISS
UniRef100_F4IKF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SPT2 chromatin protein n=2 Tax=Arabidopsis thaliana RepID=F4IKF3_ARATH	SoyBase	E_val: 4.00E-35	ISS
UniRef100_I1J6V5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6V5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g23726

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g23726 not represented in the dataset	Glyma01g23726 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g23726

Paralog	Evidence	Comments
Glyma08g36790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g23726 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g097200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g23726

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g23726

Limit To All Plant Sequences

>Glyma01g23726.1   sequence type=CDS   gene model=Glyma01g23726   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGGGCTATGACGACGAAGGAGATGGTTACGACGATTATTATGAGAATGAGGGACAAGAAAATGAGTATGAAGAGGGGGGTGAGGAAGAGTATGAAGAAGAGGAAGAGGTGCCCAGGAAGCCTTCAAAGGAAGAAATGGAGTACCTTGAGTTGAGGCAGAAGTTGAAAGAATCCATTAGAAAGCAGATGAAGAAGGATAGTAGTGCTAATGGTACTTTGCGCCGGGATTCAACCGACCGAAACAAGAATAAGCTTCCTTATGATAATTATGGCTCCTTTTTTGGTCCATCTCAACCAGTTATTGCACAGAGAGTAATCCAGGAGAGCAAGTCATTGCTAGAAAATCAGCATTTGGCATCTAGGTTTTCTAACCCACAACACATTAAGAAGAACCAGAATAAAGTACCTAGTGGAGGATCAAAGTCTTCATCTCATAATCTGGCACCCAAAGTCAGCGAGATACAAGTTAAAGCCCAGAAAATCAAGAATACTAGAGATTACTCATTTCTTTTATCTGATGATGCAGAGCTTCCAGCTCCTTCAAAAGCCCCCCCACCACAGAATATGCCTATAAGAAATTCTGAGGGACGACCAGCTCAAGTTCCAGCAAGGAGTAAACTGCCTTTGAGCAATGGTGGCAAGCATGTTCGTGCCAGTCATGAGGAACGGAATGTAGGTTCTGCTGCCGGCCGTTTGCCTCCTAAATCAGGATCCAGTTACAAGACCAGTAAACCTAGTATGGCATCAGCAGATTCTAGAAAGCAGCTTGGTAACAACAGTGATAATGGACCAGGCTGGCCAGTTGGGCCAAAAGGCTTGCCTTCAAAGATTTCTGTTGGTACCACTGGGAATAAGTCTTCAGCACCTGGTATAAAAAACTCTGTGAATGGTATGCGGAAATCACTCCCTTCAAAGAATCATCCATCCATTCCAAAACAGAGTGTAGATCAAAGAATTTCGAAGCAGAGTGTTGAACAAAGAATTCCAAAGCAGAGTGTGGAACAAAGAAGAGACATACGAGAACTAAATAGACCTAAAATGACACCAAAACAACCAGTGGCATCATCAAAACCACAGATAAATAAGCCACTTAAACAAAATTCAGTTCATACTGCTTCGCAAGATCGTCGTCCCAAGCATAAGGTTGCTAAACGACCCTTTGATGATGATGAGGACGAAGTGGATTTCAGGAACGTGATCAGAAATATCTTTAATTACAACCCCAATAAATTTGTTGATGACGATGACGATGACAATATGGAGGCAGGCTTTGATGAAATCTTGAGGGAAGAAAAGCGGAGTGAAATGATTGCTAAAAGGGAGGACGAGGAGCAACTTAGGTTAATTGAGGAGGAAGAGGAAAGAGAGAGGAGAAGAAAAATGGCAAAGTTAAAGAAACGGAAGCTTGGCTAG

Predicted protein sequences of Glyma01g23726

Limit To All Plant Sequences

>Glyma01g23726.1   sequence type=predicted peptide   gene model=Glyma01g23726   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGYDDEGDGYDDYYENEGQENEYEEGGEEEYEEEEEVPRKPSKEEMEYLELRQKLKESIRKQMKKDSSANGTLRRDSTDRNKNKLPYDNYGSFFGPSQPVIAQRVIQESKSLLENQHLASRFSNPQHIKKNQNKVPSGGSKSSSHNLAPKVSEIQVKAQKIKNTRDYSFLLSDDAELPAPSKAPPPQNMPIRNSEGRPAQVPARSKLPLSNGGKHVRASHEERNVGSAAGRLPPKSGSSYKTSKPSMASADSRKQLGNNSDNGPGWPVGPKGLPSKISVGTTGNKSSAPGIKNSVNGMRKSLPSKNHPSIPKQSVDQRISKQSVEQRIPKQSVEQRRDIRELNRPKMTPKQPVASSKPQINKPLKQNSVHTASQDRRPKHKVAKRPFDDDEDEVDFRNVIRNIFNYNPNKFVDDDDDDNMEAGFDEILREEKRSEMIAKREDEEQLRLIEEEEERERRRKMAKLKKRKLG*

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