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Report for Sequence Feature Glyma01g23470

Feature Type:gene_model
Chromosome:Gm01
Start:30208374
stop:30208835
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g23470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24620AT Annotation by Michelle Graham. TAIR10: EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186 SoyBaseE_val: 7.00E-60ISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0048610GO-bp Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0048868GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF39Panther EF-HAND CALCIUM BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_G8A011UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding pollen allergen n=1 Tax=Medicago truncatula RepID=G8A011_MEDTR SoyBaseE_val: 2.00E-70ISS
UniRef100_I1J6U9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J6U9_SOYBN SoyBaseE_val: 5.00E-91ISS

Expression Patterns of Glyma01g23470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g23470 not represented in the dataset
Glyma01g23470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g23470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g094000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g23470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g23470
>Glyma01g23470.2   sequence type=CDS   gene model=Glyma01g23470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCATGTGCGGCCCCATAACAGAGGACCTCGAATATGTATTCAAGAAGTTCGATGCAAACGGCGACGGCAAAATCTCCTCTTCGGAACTAGGCTCCATCATGAAGAGCCTTGGCCAACCCGCCACCGAAGAAGAGGTCAAGAGGATGATTCAAGAGGTTGACGCCAACGGTGACGGCCACATCAACTTAGGTGAGTTCTTGGAATTGAACACCAAGGGCGTGGACCCCGACGAGGTTTTGGAGAATCTGAAGGACGCTTTTTCCATCTTCGACGTCGACGGTAATGGGTTGATTACCGCCCAAGAACTTAACATGGTCATGGCGAGCCTTGGAGATGCCTGTTCCATTGACGAGTGCCAGAAGATGATCGCCGGCGTCGACGGCAACGGAGACGGCATGATCAATTTCGAAGAGTTTCAGTTGATGATGACCGGAAACGGAAACGGGAACATGAACAAATAA
Predicted protein sequences of Glyma01g23470
>Glyma01g23470.2   sequence type=predicted peptide   gene model=Glyma01g23470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LMCGPITEDLEYVFKKFDANGDGKISSSELGSIMKSLGQPATEEEVKRMIQEVDANGDGHINLGEFLELNTKGVDPDEVLENLKDAFSIFDVDGNGLITAQELNMVMASLGDACSIDECQKMIAGVDGNGDGMINFEEFQLMMTGNGNGNMNK*






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