SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26170 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr1:9047539-9054438 REVERSE LENGTH=1022 | SoyBase | E_val: 0 | ISS |
| GO:0000059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, docking | SoyBase | N/A | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG2274 | KOG | Predicted importin 9 | JGI | ISS | |
| PTHR10997 | Panther | IMPORTIN (RAN-BINDING PROTEIN) | JGI | ISS | |
| PTHR10997:SF9 | Panther | IMPORTIN-ALPHA RE-EXPORTER RELATED | JGI | ISS | |
| PF03810 | PFAM | Importin-beta N-terminal domain | JGI | ISS | |
| UniRef100_F4IE40 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Armadillo/beta-catenin-like repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4IE40_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023371C8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023371C8 related cluster n=1 Tax=unknown RepID=UPI00023371C8 | SoyBase | E_val: 0 | ISS |
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Glyma01g23427 not represented in the dataset |
Glyma01g23427 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g23427.1 sequence type=CDS gene model=Glyma01g23427 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAACCTCGTGGATCAAGATCAGCAATGGCTGCTCAGTTGCTTGTCCGCCACACTCGACCCCAACCCCGAGGTTCGCTGTTTCGCCGAAGCTTCCCTCGATCAAGCCTCTCGCCAACCAGGTTTTGGCAGTGCATTATCAAAAGTTGCTGCAAACAAGGAGCTCGTGGTGGGACTGCGTCAATTAGCTGCAGTCCTTCTTAAGCAGTTTGTTAAAAAGCATTGGCAAGAGGGTGAGGACTCTTTTGAACCTCCTGTTGTTGCTAGTGATGAAAAGGAAATCATCCGCAGAATGCTTCTATTGGCATTGGATGACCCTCATAAGAAAATTTGCACGGCTATTGGTATGGCTGTGGCATCCATTGCAATGCATGACTGGCCAGAGTTATGGCCGGATTTGTTACCATTTCTCCTGAATTTGATTAACAATCAAACCAACATGAATGGAGTGCATGGAGCTATGAGATGCTTGGTTCTTCTCTCTGTGGACTTGGATGATAAAATGGTTCCAACATTAATACCTGCTCTGTTCCCAAGTTTGCTGACAATTGTCTCCTCTCCCCAGATATATGATCCATACATTCGAATGAAGGCCCTTTCAATAATCTATTCTTGCACTTCTATGCTGGGGACAATGAGTGGTGTCTATAAGGCAGAAACAAGTTCTCTGATAGTTCCTTTGCTTAAACCATGGATGGACCAATTTTCTTCTATTCTACAAATTCCAGTTCAATCTGAAAATCCAGATGATTGGAGTATTAAAATGGAGGTTTTGAAGTGCTTGAATCAGTTTATTCAGAATTTTTCAAGTCTATTTACAAGCGAATTTGAGGTTATATTGGGACCTTTGTGGAATACATTTGTCTCTTCTTTGAGAGTTTATGAGAAAGCGTCCATTGAAGGAACAGAAGATTCACATGAGGGAAGATATGATTCTGATGGTTCAGAGAAAAGCCTTGATTCATTTGTTATCCAGCTGTTTGAACTCATGTTGACCATTGTGGGTAATCCAAGACTGGGAAAGGTGGTTGTGGCTAATATCAGAGAATTGGTGTACTATACTATTGCTTTTCTTCAAATGACTGAGCAGCAGGTTCATACATGGTCTGTGGATGCTAACCAGTTCATTGCTGATGAAGAAGATGCCACTTATAGTTGCCGCGTCTCTGGTGTGCTTTTACTGGAAGAGGTTGTGAATTCTTTTGCTGGTGAAGGAATTTTGGCCATAACAGATGGTGCAAAACAATGGTTCACCGAGTCTCAAATTAGAAAAGCAGCTGGTAATGCAAGCTGGTGGAGGATAAGAGAAGCTACTCTTTTTGCCTTATCGTCTCTTTCAGAAGAACTGTTGGAGACAGAGGAAACCGGATTTGATACAAGTAGCTTGAAGCACCTGGTTGAGCAGATTTTCACTGAAGACTCTCTAATAGGTCCTCTTGAATATCCCTTTTTATATGCTCGCATCTTTACGTCAGTTGCTAAATTGTCTTCTTTGATAAGCAATGGTTTACTAGAACACTTTCTTTATTTAGCAATGAAAGCAATTACAATGGATGTGCCCCCACCTGTAAAAGTAGGTGCCTGCAGAGCACTTACTAACCTTCTTCCTGAAGCAAAAAAAGAAATTGTCCAATCGCAATTGTTGGGTTTAATTTCATCCCTCACAGATCTTCTTAATCATGCATCAGATGAAACCTTGCTCATGGTACTTGATACATTGCTTGCTGCAGTAAAAGCAGGTCATGAGTCATCAACATTAGTTGAACACATGATTTCTCCTGTAATCCTTAATGTGTGGGCATCACATGTTTCGGATCCTTTTATCAGTATTGATGCACTGGAAGTTCTTGAGGCTATCAAAAGCATTCCTGAATGTGTACATCCATTGGTTTCTAGAATTTTGCCGTATATTGGACCAATTTTGAATAAACCCCAAGAGCAGGCTGATGGTTTGGTAGCTGGATCATTAGATCTGGTAACAATGTTACTGAAGAATGCCCCTGCTGATGTAGTGAAAGCAATATATGGTGTCTCTTTTAATGCTGTTATCAACATAATCCTTCAAAGTGATGACCACAGTGAAATTCAGAATGCTACAGAATGTTTATCTGCTTTTATATCTGGGGGAAGACAAGAAATTCTTGCATGGGGATCTGATTCTGGATCAACTATGAGAAGTTTACTTGATATTGCTTCAAGACTGCTAGACCCCAAATTGGAAAGCTCTGGGTCTCTCTTTGTTGGAAGTTACATTCTTCAACTGATTTTGCATTTACCATCACAGATGGCTGTACATATACGAGACCTGATTGCTGCTCTTGTCAAACGCATGCAATCTGCTCAAAACTCTGTCTTGCTAAGCTCATTGCTAATTGTTTTTGCCAGACTGGTACACATGAGTGTTCCTAATGTTGGACAATTTATTGATTTGCTGATCTCAATTCCTGCGGAAGGACATGGTAATTCCTTTGCTTATATAATGTCAGAATGGACTAAGCAGCAAGGGGAGATACAGGGGGCATATCAAATAAAAGTCACTACAAGTGCCCTGGCCTTGTTGCTAACCAGTAGGCACAATGAATTGGCAAATATACATGTCCAGGGCTATCTTATTAAGTCTGGCGAGGGAATAACTACAAGATCAAAAGCTAAATCAGCCCCAGATCAATGGGTAATGTTGCCACTTTCTACAAAGATAGTGGCTTTATTGGCAGATGCATTAACTGAGATACAAGAACAAGTTTTGGCCGCTGATGATGAGGATAGTGACTGGGAAGAAGTTCAAGCAGATGGCATTGAAAATGATAAAGAATTTCTTTATTCAGTATCTACATCTTCGGGAAAAGCCACAAATGAACAACTTGAAGCAATGGCGAAAGTATTTAATGAGGATCAAGATGATCACTATGAAGATGACCTTTTAAGTATTGCTGATCCTCTCAATCAGATAAACCTGGCAAATTACCTTCTTGATTTCTTTGTTAGCTTTTCTCAGTCTGACAGACAGCTCTTAGATCACATTTGCAAGAGCTTGTCTCAGTCTCAACGAAATGCCATTCAAATGGTACTGAAGAGATGA
>Glyma01g23427.1 sequence type=predicted peptide gene model=Glyma01g23427 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNLVDQDQQWLLSCLSATLDPNPEVRCFAEASLDQASRQPGFGSALSKVAANKELVVGLRQLAAVLLKQFVKKHWQEGEDSFEPPVVASDEKEIIRRMLLLALDDPHKKICTAIGMAVASIAMHDWPELWPDLLPFLLNLINNQTNMNGVHGAMRCLVLLSVDLDDKMVPTLIPALFPSLLTIVSSPQIYDPYIRMKALSIIYSCTSMLGTMSGVYKAETSSLIVPLLKPWMDQFSSILQIPVQSENPDDWSIKMEVLKCLNQFIQNFSSLFTSEFEVILGPLWNTFVSSLRVYEKASIEGTEDSHEGRYDSDGSEKSLDSFVIQLFELMLTIVGNPRLGKVVVANIRELVYYTIAFLQMTEQQVHTWSVDANQFIADEEDATYSCRVSGVLLLEEVVNSFAGEGILAITDGAKQWFTESQIRKAAGNASWWRIREATLFALSSLSEELLETEETGFDTSSLKHLVEQIFTEDSLIGPLEYPFLYARIFTSVAKLSSLISNGLLEHFLYLAMKAITMDVPPPVKVGACRALTNLLPEAKKEIVQSQLLGLISSLTDLLNHASDETLLMVLDTLLAAVKAGHESSTLVEHMISPVILNVWASHVSDPFISIDALEVLEAIKSIPECVHPLVSRILPYIGPILNKPQEQADGLVAGSLDLVTMLLKNAPADVVKAIYGVSFNAVINIILQSDDHSEIQNATECLSAFISGGRQEILAWGSDSGSTMRSLLDIASRLLDPKLESSGSLFVGSYILQLILHLPSQMAVHIRDLIAALVKRMQSAQNSVLLSSLLIVFARLVHMSVPNVGQFIDLLISIPAEGHGNSFAYIMSEWTKQQGEIQGAYQIKVTTSALALLLTSRHNELANIHVQGYLIKSGEGITTRSKAKSAPDQWVMLPLSTKIVALLADALTEIQEQVLAADDEDSDWEEVQADGIENDKEFLYSVSTSSGKATNEQLEAMAKVFNEDQDDHYEDDLLSIADPLNQINLANYLLDFFVSFSQSDRQLLDHICKSLSQSQRNAIQMVLKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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