SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26160 | AT | Annotation by Michelle Graham. TAIR10: Metal-dependent phosphohydrolase | chr1:9044784-9046945 REVERSE LENGTH=258 | SoyBase | E_val: 8.00E-117 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG3197 | KOG | Predicted hydrolases of HD superfamily | JGI | ISS | |
| PTHR11845 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR11845:SF4 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF01966 | PFAM | HD domain | JGI | ISS | |
| UniRef100_B9RLA4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RLA4_RICCO | SoyBase | E_val: 5.00E-118 | ISS |
| UniRef100_UPI00023371C7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023371C7 related cluster n=1 Tax=unknown RepID=UPI00023371C7 | SoyBase | E_val: 0 | ISS |
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Glyma01g23196 not represented in the dataset |
Glyma01g23196 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g093200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g23196.1 sequence type=CDS gene model=Glyma01g23196 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGATTATTCATTATTCAGCAGCGTCTTGTTGTTGCGTGCCATCGCTGCACCGCTCTTCGCCTTCTCGCTCGATTCTCGCACCCGCAATCTTTTTCTTCCGCGACGCCGCTCCGAACCTCAGGCTCGTCTCGGTTTGGTCCCAACCTCCAGGCTCGGAGGGCTTCGGCGAACCCAACAAACACTCTTCTCGTGATGCCTCCGTTGGGTTCTCCGCTTCTTCTTCGTCGGTCATTGATTTTCTCACTCTCTGCCACCGCCTCAAGACCACAAAAAGGAAAGGATGGGTTAATCATGGGATAAAAGGTGCTGAATCGATTGCTGACCATATGTACCGCATGGCTTTAATGGCCTTGGTTTCCGGCGATGTTCCTGGATTGGATAGAGAAAGATGTATTAAAATAGCACTCGTGCATGATATTGCAGAGGCTATTGTAGGAGATATAACACCATCTGATGGTGTGCCCAAGGCTGAAAAGAGCAGAATGGAGCAGGAAGCCTTAAGCAAAATGTGTGAACTTCTCGGTGGAGGGATAAGAGCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAGGTTGAGATGATTCTGCAAGCGCTGGAATATGAAACAGAACATGGAAAAGTGTTGGATGAATTCTTCCTTTCAACTGCAGGGAAGTTTCAAACTGAAATCGGAAAAAGTTGGGCGGCTGAGATCATTTCAAGAAGAAAATCTTTATCAGCAAAAAGGCCACGTTGA
>Glyma01g23196.1 sequence type=predicted peptide gene model=Glyma01g23196 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVIIHYSAASCCCVPSLHRSSPSRSILAPAIFFFRDAAPNLRLVSVWSQPPGSEGFGEPNKHSSRDASVGFSASSSSVIDFLTLCHRLKTTKRKGWVNHGIKGAESIADHMYRMALMALVSGDVPGLDRERCIKIALVHDIAEAIVGDITPSDGVPKAEKSRMEQEALSKMCELLGGGIRAEEIKELWAEYENNSSLEANLVKDFDKVEMILQALEYETEHGKVLDEFFLSTAGKFQTEIGKSWAAEIISRRKSLSAKRPR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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