|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G45660 | AT | Annotation by Michelle Graham. TAIR10: AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214 | SoyBase | E_val: 1.00E-28 | ISS |
GO:0000060 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, translocation | SoyBase | N/A | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
GO:0009911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development | SoyBase | N/A | ISS |
GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
GO:0010077 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of inflorescence meristem identity | SoyBase | N/A | ISS |
GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0008134 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription factor binding | SoyBase | N/A | ISS |
PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
PTHR11945:SF19 | Panther | MADS BOX PROTEIN | JGI | ISS | |
PF01486 | PFAM | K-box region | JGI | ISS | |
UniRef100_A1XG54 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SOC1 n=1 Tax=Glycine max RepID=A1XG54_SOYBN | SoyBase | E_val: 5.00E-30 | ISS |
UniRef100_I1JKH6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKH6_SOYBN | SoyBase | E_val: 1.00E-38 | ISS |
Glyma01g23089 not represented in the dataset |
Glyma01g23089 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g23089.1 sequence type=CDS gene model=Glyma01g23089 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTACAGCATTTGAAGCAAGAGGCAGCAAACATGATGAAGAAGATTGGCCTTCTTAAAGCTGCAAAACGGAAGTTCTTGGGGGAAGGGTTGGGGGCTTGTTCCATTGAGGAACTGCAATGGATAGAACAACAGTTGGAGAGGAGTTTAAGTAATGTTAGAGCCAGAAAGATCCAGGTTTTCAAAGAACAAATCGAGCAACTAAAAGAAAAG
>Glyma01g23089.1 sequence type=predicted peptide gene model=Glyma01g23089 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLQHLKQEAANMMKKIGLLKAAKRKFLGEGLGACSIEELQWIEQQLERSLSNVRARKIQVFKEQIEQLKEK
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||