SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68780 | AT | Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein | chr1:25831881-25833335 REVERSE LENGTH=432 | SoyBase | E_val: 5.00E-164 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_G7I4Y3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Piriformospora indica-insensitive protein n=1 Tax=Medicago truncatula RepID=G7I4Y3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023371BD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023371BD related cluster n=1 Tax=unknown RepID=UPI00023371BD | SoyBase | E_val: 0 | ISS |
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Glyma01g22730 not represented in the dataset |
Glyma01g22730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g11350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g090200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g22730.2 sequence type=transcript gene model=Glyma01g22730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTATATATAGGCCTTCAGTCACTTGCTACAGCTCTGGCCAAATTAGACTCATTTATGACTTTAAGCTTCGAGAACTGTGCTAGCATAATAACATCTCGTGTTAATCTCTTATATCTGCCATATACTACTTCCTTAGCTTTTCCATAAACACAAGGAAGAAAAGAGTTTTGCTCCATCCATCTTGAGCTTATCCTGTGCCTGACAGTGCTGCTTTGACTCAATAACCTCATGAGGAACTTCAAGGCTGTTGGTCAAGCCATCACTGCTCTCTTCATCATCTCTCTGAGTGCATGGTGTTATGGACAAGTAGAACTTGACATGGCTCCAATGGAGAAGGCAGAGCGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGCTGGACTCCTATTCAGGGGGTCTCTTGTGATCTGTTTAATGGATTTTGGTATGTTACTGTCTTGAACATTGGACCAATCCACGATAATTCTCTAAGTTGTGCCAAAATTTTGGAATTCAGACCACAGTTGTTTGAGCTGAAGCACCTTAAAGCTCTATCCCTATTCAAATGCTTTGAATCACAACACAGGCATCAAGTTACCATCCCCAATGCAAACTGGGAAAAGCTTGCTGGCAGCTTAGAATCACTTGAGTTTAGATCAAACAGAGGTCTCATTGGAAAAATTCCTTCAAGTTTTGGTGCCCTCAAGAACCTTCAGTCACTAGTACTATTAGAAAATGGTTTAACAGGTAAAATTCCACCAGATATTGGTAAACTGAACAAGTTGAAGAGGCTTGTTCTTGCTGGAAACCATTTTAGTGGACACATTCCAGATATTTTTAGTGCATTAGGCGAGTTATTAATTCTTGATTTAAGTAGAAATTCACTATCTGGGACTTTACCTTTGACACTTGGAAGCTTAACTTCCCTTTTGAAGCTTGATGTGAGCCATAACCATTTGGAGGGGAATCTGCTGAAAGAATTTGCTTATCTTAAGAATTTGACCCTTATGGACCTTAGGAATAACAGATTCTCTGGAGGGTTGACATTGAGTATTCAAGAGATGTATTCTTTAGAGGAAATGGTTCTGTCCAACAATGCAATAGGTGGGGATATCAGGACCCTTAAGTGGGAAAACCTTCACAACTTGATCATTTTGGATCTCTCTAACATGGGGTTGAAAGGGGAAATTCCTGAGTCTATATCGGAATTAAAGAGGTTGAGGTTTTTAGGCCTTAGTGACAACAACCTCACAGGCAACCTTTCACCAAATCTATCTACTCTTCCTTGTCTCAATGCACTATATGTTAGTGGCAACAATTTGACAGGAGAGCTTAAATTCTCTGTGGAGTTTTATGGAAAAATGAGAACACGTTTTGGGGCCTGGAACAACCCTAGCCTTTGCTACCCTCTTGGAGTAATATCAACAAGTCATGTTCCATATGGGGTAAAACCATGCCAGCAAGAGATCAAATTGCTAAAATCTAATACAACTGATGGGGATGTGAAGAGGACTTTCCATTCCATAGCCTCTTTGAGCCATACTCCTAATTCCTTCTGGTGGATTTTTCTATTTTTTTTAATATCTTATTTAGGTCTTTAATCAAGAGTAGTTCAACTTTGGCTTTTACTTTTTTATTAGGGTTATTAATTACAACAACCTTTATTGTACTTTGTTATGACATAAGTTAACCGTTTTTTTTCAACTTGCTAGCTGGCATGATCTTACCATCGGCTAGTTTAATTTGTCTATTTAATGTTTGTACACATTTTCTTAACAAAAGTTCAGATAAATTGAATCTTGATAGCTCATTAGAAT
>Glyma01g22730.1 sequence type=CDS gene model=Glyma01g22730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCAATGGAGAAGGCAGAGCGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGCTGGACTCCTATTCAGGGGGTCTCTTGTGATCTGTTTAATGGATTTTGGTATGTTACTGTCTTGAACATTGGACCAATCCACGATAATTCTCTAAGTTGTGCCAAAATTTTGGAATTCAGACCACAGTTGTTTGAGCTGAAGCACCTTAAAGCTCTATCCCTATTCAAATGCTTTGAATCACAACACAGGCATCAAGTTACCATCCCCAATGCAAACTGGGAAAAGCTTGCTGGCAGCTTAGAATCACTTGAGTTTAGATCAAACAGAGGTCTCATTGGAAAAATTCCTTCAAGTTTTGGTGCCCTCAAGAACCTTCAGTCACTAGTACTATTAGAAAATGGTTTAACAGGTAAAATTCCACCAGATATTGGTAAACTGAACAAGTTGAAGAGGCTTGTTCTTGCTGGAAACCATTTTAGTGGACACATTCCAGATATTTTTAGTGCATTAGGCGAGTTATTAATTCTTGATTTAAGTAGAAATTCACTATCTGGGACTTTACCTTTGACACTTGGAAGCTTAACTTCCCTTTTGAAGCTTGATGTGAGCCATAACCATTTGGAGGGGAATCTGCTGAAAGAATTTGCTTATCTTAAGAATTTGACCCTTATGGACCTTAGGAATAACAGATTCTCTGGAGGGTTGACATTGAGTATTCAAGAGATGTATTCTTTAGAGGAAATGGTTCTGTCCAACAATGCAATAGGTGGGGATATCAGGACCCTTAAGTGGGAAAACCTTCACAACTTGATCATTTTGGATCTCTCTAACATGGGGTTGAAAGGGGAAATTCCTGAGTCTATATCGGAATTAAAGAGGTTGAGGTTTTTAGGCCTTAGTGACAACAACCTCACAGGCAACCTTTCACCAAATCTATCTACTCTTCCTTGTCTCAATGCACTATATGTTAGTGGCAACAATTTGACAGGAGAGCTTAAATTCTCTGTGGAGTTTTATGGAAAAATGAGAACACGTTTTGGGGCCTGGAACAACCCTAGCCTTTGCTACCCTCTTGGAGTAATATCAACAAGTCATGTTCCATATGGGGTAAAACCATGCCAGCAAGAGATCAAATTGCTAAAATCTAATACAACTGATGGGGATGTGAAGAGGACTTTCCATTCCATAGCCTCTTTGAGCCATACTCCTAATTCCTTCTGGTGGATTTTTCTATTTTTTTTAATATCTTATTTAGGTCTTTAA >Glyma01g22730.2 sequence type=CDS gene model=Glyma01g22730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAACTTCAAGGCTGTTGGTCAAGCCATCACTGCTCTCTTCATCATCTCTCTGAGTGCATGGTGTTATGGACAAGTAGAACTTGACATGGCTCCAATGGAGAAGGCAGAGCGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGCTGGACTCCTATTCAGGGGGTCTCTTGTGATCTGTTTAATGGATTTTGGTATGTTACTGTCTTGAACATTGGACCAATCCACGATAATTCTCTAAGTTGTGCCAAAATTTTGGAATTCAGACCACAGTTGTTTGAGCTGAAGCACCTTAAAGCTCTATCCCTATTCAAATGCTTTGAATCACAACACAGGCATCAAGTTACCATCCCCAATGCAAACTGGGAAAAGCTTGCTGGCAGCTTAGAATCACTTGAGTTTAGATCAAACAGAGGTCTCATTGGAAAAATTCCTTCAAGTTTTGGTGCCCTCAAGAACCTTCAGTCACTAGTACTATTAGAAAATGGTTTAACAGGTAAAATTCCACCAGATATTGGTAAACTGAACAAGTTGAAGAGGCTTGTTCTTGCTGGAAACCATTTTAGTGGACACATTCCAGATATTTTTAGTGCATTAGGCGAGTTATTAATTCTTGATTTAAGTAGAAATTCACTATCTGGGACTTTACCTTTGACACTTGGAAGCTTAACTTCCCTTTTGAAGCTTGATGTGAGCCATAACCATTTGGAGGGGAATCTGCTGAAAGAATTTGCTTATCTTAAGAATTTGACCCTTATGGACCTTAGGAATAACAGATTCTCTGGAGGGTTGACATTGAGTATTCAAGAGATGTATTCTTTAGAGGAAATGGTTCTGTCCAACAATGCAATAGGTGGGGATATCAGGACCCTTAAGTGGGAAAACCTTCACAACTTGATCATTTTGGATCTCTCTAACATGGGGTTGAAAGGGGAAATTCCTGAGTCTATATCGGAATTAAAGAGGTTGAGGTTTTTAGGCCTTAGTGACAACAACCTCACAGGCAACCTTTCACCAAATCTATCTACTCTTCCTTGTCTCAATGCACTATATGTTAGTGGCAACAATTTGACAGGAGAGCTTAAATTCTCTGTGGAGTTTTATGGAAAAATGAGAACACGTTTTGGGGCCTGGAACAACCCTAGCCTTTGCTACCCTCTTGGAGTAATATCAACAAGTCATGTTCCATATGGGGTAAAACCATGCCAGCAAGAGATCAAATTGCTAAAATCTAATACAACTGATGGGGATGTGAAGAGGACTTTCCATTCCATAGCCTCTTTGAGCCATACTCCTAATTCCTTCTGGTGGATTTTTCTATTTTTTTTAATATCTTATTTAGGTCTTTAA
>Glyma01g22730.1 sequence type=predicted peptide gene model=Glyma01g22730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPMEKAERDALYSTIQGFVGDWWNGSDLYPDPCGWTPIQGVSCDLFNGFWYVTVLNIGPIHDNSLSCAKILEFRPQLFELKHLKALSLFKCFESQHRHQVTIPNANWEKLAGSLESLEFRSNRGLIGKIPSSFGALKNLQSLVLLENGLTGKIPPDIGKLNKLKRLVLAGNHFSGHIPDIFSALGELLILDLSRNSLSGTLPLTLGSLTSLLKLDVSHNHLEGNLLKEFAYLKNLTLMDLRNNRFSGGLTLSIQEMYSLEEMVLSNNAIGGDIRTLKWENLHNLIILDLSNMGLKGEIPESISELKRLRFLGLSDNNLTGNLSPNLSTLPCLNALYVSGNNLTGELKFSVEFYGKMRTRFGAWNNPSLCYPLGVISTSHVPYGVKPCQQEIKLLKSNTTDGDVKRTFHSIASLSHTPNSFWWIFLFFLISYLGL* >Glyma01g22730.2 sequence type=predicted peptide gene model=Glyma01g22730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNFKAVGQAITALFIISLSAWCYGQVELDMAPMEKAERDALYSTIQGFVGDWWNGSDLYPDPCGWTPIQGVSCDLFNGFWYVTVLNIGPIHDNSLSCAKILEFRPQLFELKHLKALSLFKCFESQHRHQVTIPNANWEKLAGSLESLEFRSNRGLIGKIPSSFGALKNLQSLVLLENGLTGKIPPDIGKLNKLKRLVLAGNHFSGHIPDIFSALGELLILDLSRNSLSGTLPLTLGSLTSLLKLDVSHNHLEGNLLKEFAYLKNLTLMDLRNNRFSGGLTLSIQEMYSLEEMVLSNNAIGGDIRTLKWENLHNLIILDLSNMGLKGEIPESISELKRLRFLGLSDNNLTGNLSPNLSTLPCLNALYVSGNNLTGELKFSVEFYGKMRTRFGAWNNPSLCYPLGVISTSHVPYGVKPCQQEIKLLKSNTTDGDVKRTFHSIASLSHTPNSFWWIFLFFLISYLGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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