SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26100 | AT | Annotation by Michelle Graham. TAIR10: Cytochrome b561/ferric reductase transmembrane protein family | chr1:9022716-9024081 REVERSE LENGTH=236 | SoyBase | E_val: 6.00E-97 | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0008805 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbon-monoxide oxygenase activity | SoyBase | N/A | ISS |
| KOG1619 | KOG | Cytochrome b | JGI | ISS | |
| PTHR10106 | Panther | CYTOCHROME B561 | JGI | ISS | |
| PTHR10106:SF0 | Panther | CYTOCHROME B561-RELATED | JGI | ISS | |
| PF03188 | PFAM | Eukaryotic cytochrome b561 | JGI | ISS | |
| UniRef100_G7JX23 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome b reductase n=2 Tax=Medicago truncatula RepID=G7JX23_MEDTR | SoyBase | E_val: 3.00E-127 | ISS |
| UniRef100_UPI00023371BA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023371BA related cluster n=1 Tax=unknown RepID=UPI00023371BA | SoyBase | E_val: 6.00E-165 | ISS |
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Glyma01g22650 not represented in the dataset |
Glyma01g22650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g11280 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g089700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g22650.1 sequence type=CDS gene model=Glyma01g22650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACTGTCTCTCCCTCACTCCTCTTCTTTGCAAGAGTCTTAGGGCTTGCAGTGGCAGTGCTTGTCCTCATATGGGCCCTTGCCTTTAAGTCCAGCTTCCTCACTCCCTCACTCTCCCAACAAGACCTCATATATGCAGTTCTTCATCCTCTGCTCATGGTCATTGGCTTTATCCTCTTAAGTGGAGAAGCAATTTTGGTGCACAGATGGTTAGTTGGATCAAGGGGGTTGAAGAAATTGGTGCATTTGTGGCTTCAAGGGGTGGCTTTAGCTTCTGGGATCTTTGGGATTTGGACAAAATTCCAGGGAAAGGATGGGATTGTGGCAAATTTCTATAGCCTACATTCATGGATGGGTTTGGCTTCTGTATCCCTCTTCGGAGCCCAGTGGTTGATTGGCTTCTTGAACTTTTGGCACCGAGGAGAGGTGCGCACTGTGAGGATAAGGATCTTACCATGGCATGTGTTCCTTGGCCTATACACTTATGCATTGGCAATAGCAACAGCTGAAACTGGATTGTTAGAGAAATTAACATTCTTACAAACAAAGAGAAATGTACCTAAGCACAGCACTGAGTCCATGGTGGTAAATAGTTTAGGGTTGGGTCTTGCCCTCCTTAGTGGCTTTGTTATTTTGGTTGCTGTTTCACCCAACTATCAAATCCTTCAAAGCAAACTTTTGTACTCAGAAACAAGGTGTTTGTCATCTTAA
>Glyma01g22650.1 sequence type=predicted peptide gene model=Glyma01g22650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATVSPSLLFFARVLGLAVAVLVLIWALAFKSSFLTPSLSQQDLIYAVLHPLLMVIGFILLSGEAILVHRWLVGSRGLKKLVHLWLQGVALASGIFGIWTKFQGKDGIVANFYSLHSWMGLASVSLFGAQWLIGFLNFWHRGEVRTVRIRILPWHVFLGLYTYALAIATAETGLLEKLTFLQTKRNVPKHSTESMVVNSLGLGLALLSGFVILVAVSPNYQILQSKLLYSETRCLSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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