SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25690 | AT | Annotation by Michelle Graham. TAIR10: Hydroxyproline-rich glycoprotein family protein | chr3:9354061-9357757 FORWARD LENGTH=1004 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009707 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane | SoyBase | N/A | ISS |
| PTHR23213 | Panther | FORMIN-RELATED | JGI | ISS | |
| UniRef100_G7JX26 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein CHUP1 n=1 Tax=Medicago truncatula RepID=G7JX26_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J6R6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6R6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g22620 not represented in the dataset |
Glyma01g22620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g11260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g089300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g22620.1 sequence type=CDS gene model=Glyma01g22620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAGTCAGGTTAGGACTCATAGTTGCTGCTTCACTTGCAGCTTTTACTGTTAAGCAGCTGAATGTCAAAAGCTCAAAACCAGAACTTAAAGATGAGTGCACAGAAGAGGAGCATGTTCTCCAAGAGAATGAAAGGGTGGAGGAAGAGGAGAAAGAGGAGGTTAAGTTAATTAGCAGCATAATTAATAGAGCGAATGACTTTGAAGATGATATTCTACCAGAATTTGAAGATCTTCTGTCTGGGGAGATTGAGTTTCCATTACCACCTGATAAGGATGAGAAAGACAAAGTTTATGAAATTGAGATGGCAAACAATGCAAGTGAACTAGAAAGATTGCGACAACTAGTGAAGGAATTGGAGGAGAGGGAAGTGAAACTTGAAGGAGAATTGCTTGAGTACTATGGTTTGAAGGAGCAGGAGTCAGACATTGTGGAGTTACAAAGGCAACTGAAAATTAAGACTGTGGAAATAGATATGCTTAATATTACAATCAATTCCTTGCAGGCAGAAAGGAAGAAGCTTCAAGAAGAGCTCACACAAGGAGCTTCAGCCAAGAAAGAACTTGAGGTGGCTAGAAACAAGATCAAGGAGCTACAAAGGCAGATACAGCTTGAGGCTAACCAAACGAAAGGCCAGTTGTTGTTGCTTAAACAACAAGTTTCTACTCTACTGGTGAAAGAAGAAGAGGCTGCCAGAAAAGATGCTGAAGTTGAAAAGAAATTGAAAGCTGTGAATGACTTAGAGGTTGCAGTAGTGGAGCTTAAGAGAAAAAACAAAGAACTTCAACATGAGAAACGAGAGTTAACAGTTAAACTCAATGTTGCTGAATCTAGAGCAGCTGAGCTCTCCAATATGACAGAGAGTGAAATGGTTGCCAAGGCAAAAGAGGAGGTTAGTAACCTGAGGCATGCAAACGAAGACCTGCTAAAGCAAGTTGAAGGGCTACAGATGAATAGGTTCAGTGAAGTTGAAGAGCTTGTATACCTTCGTTGGGTTAATGCATGCTTGAGGTATGAGCTAAGGAATAACCAAACACCCCAAGGAAAAGTATCGGCCCGTGATCTCAGCAAGAGTCTTAGCCCGAAATCTCAAGAGAAGGCTAAGCAGCTGATGTTAGAATATGCTGGATCAGAACGTGGACAAGGGGACACAGATCTTGAAAGCAACTTCTCTCATCCTTCTTCACCAGGAAGTGAAGATTTTGACAATGCTTCCATTGATAGCTCTACTAGCAAATATAGTAGTCTTAGCAAGAAAACTAGCCTAATCCAAAAGTTTAAGAAATGGGGTAAAAGCAAAGATGATTCTAGTGCTCTTTCATCACCAGCTAGATCCTTTTCAGGAGGTTCTCCAAGGAGGATGAGTGTGAGTGTTAAACAAAGGGGTCCTCTAGAATCCTTAATGCTAAGGAATGCTAGTGATAGTGTATCCATCACCAGCTTTGGGCTAAGGGATCAGGAACCTACTGATTCACCTGAAACTCCAAATGACATGAGAAGAGTTCCATCCAGTGATTCCTTAAATTCTGTTGCTTCTTCATTTCAATTGATGTCTAAATCAGTTGATGGATCTCTGGATGAGAAGTATCCTGCGTATAAAGATCGCCACAAATTGGCCTTGGCAAGGGAAAAACAACTTAAAGAAAAGGCTGAGAAAGCAAGAGTGCTGAGGTTTGGTGACAATTCAGGTTTGAACATGACCAAGGCTGAAAGAGGGAGTCCTATATCTTTGCCACCAAAGCTTACTCAAATAAAGGAGAAACCAGTTGTTTCTGGCACTCCAAATGATCAATCTGATGATGGAAAGAATGTTGATAATCAAACCATTAGCAAGATGAAGCTTGCTCACATTGAGAAAAGGCCTACTAGGGTGCCTAGACCTCCTCCTAGACCATCTGGTGGAGCTGCTGTTACCGCAACTGCAAATCCTTCCAACGGAGTACCATCTGCTCCACCACCTCCTCCTCCTCCTCCAGGCGCTCCACCACCACCACCACCGCCACCAGGTGGACCACCTCCCCCACCTCCTCCCCCAGGAAGCCTATCAAGAGGTGGAATGGACGGTGACAAAGTTCACCGAGCTCCACAGCTAGTTGAATTTTATCAAACATTGATGAAAAGGGAGGCAAAGAAGGATACTTCATCACTATTAGTTACTTCTGCAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGTGAAATTGAGAATAGATCATCATTCCTCTTAGCTGTGAAAGCTGATGTAGAAACACAAGGTGATTTTGTCATGTCCTTGGCAGCTGAAGTTCGAGCAGCCTCCTTCTCAGATATTAATGACTTGGTGGCCTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCTTGGTTGACGAACGAGCCGTCCTCAAGCACTTTGACTGGCCTGAAGGAAAAGCAGATGCACTAAGGGAGGCAGCTTTTGAATATCAGGATTTGATGAAATTGGAGAACCGAGTCTCCACTTTCGTTGATGATCCCAATCTCCCATGTGAAGCTGCACTGAAGAAAATGTATTCATTGCTTGAAAAAGTGGAGCAAAGCGTATATGCTCTCCTGCGGACAAGAGATATGGCCATTTCACGGTACAAGGAATTTGGAATCCCAGTGAACTGGCTAATGGATTCAGGGGTTGTAGGCAAGATCAAGCTTTCTTCTGTACAACTGGCAAAGAAGTATATGAAACGTGTTGCATCTGAACTTGATGAACTATCTGGTCCTGATAAAGAACCAGCTAGAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGGAGCCGCATCCAAACCTCTCAAGCTGGTGAAGATAGCAAATCAGAAACTTAG
>Glyma01g22620.1 sequence type=predicted peptide gene model=Glyma01g22620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIVRLGLIVAASLAAFTVKQLNVKSSKPELKDECTEEEHVLQENERVEEEEKEEVKLISSIINRANDFEDDILPEFEDLLSGEIEFPLPPDKDEKDKVYEIEMANNASELERLRQLVKELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEELTQGASAKKELEVARNKIKELQRQIQLEANQTKGQLLLLKQQVSTLLVKEEEAARKDAEVEKKLKAVNDLEVAVVELKRKNKELQHEKRELTVKLNVAESRAAELSNMTESEMVAKAKEEVSNLRHANEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNNQTPQGKVSARDLSKSLSPKSQEKAKQLMLEYAGSERGQGDTDLESNFSHPSSPGSEDFDNASIDSSTSKYSSLSKKTSLIQKFKKWGKSKDDSSALSSPARSFSGGSPRRMSVSVKQRGPLESLMLRNASDSVSITSFGLRDQEPTDSPETPNDMRRVPSSDSLNSVASSFQLMSKSVDGSLDEKYPAYKDRHKLALAREKQLKEKAEKARVLRFGDNSGLNMTKAERGSPISLPPKLTQIKEKPVVSGTPNDQSDDGKNVDNQTISKMKLAHIEKRPTRVPRPPPRPSGGAAVTATANPSNGVPSAPPPPPPPPGAPPPPPPPPGGPPPPPPPPGSLSRGGMDGDKVHRAPQLVEFYQTLMKREAKKDTSSLLVTSASNASDARSNMIGEIENRSSFLLAVKADVETQGDFVMSLAAEVRAASFSDINDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLENRVSTFVDDPNLPCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYKEFGIPVNWLMDSGVVGKIKLSSVQLAKKYMKRVASELDELSGPDKEPAREFLVLQGVRFAFRVHQFAGGFDAESMKAFEELRSRIQTSQAGEDSKSET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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