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Report for Sequence Feature Glyma01g22580

Feature Type:gene_model
Chromosome:Gm01
Start:28513352
stop:28526497
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g22580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63690AT Annotation by Michelle Graham. TAIR10: Nucleic acid-binding, OB-fold-like protein | chr5:25492864-25493283 REVERSE LENGTH=139 SoyBaseE_val: 2.00E-64ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3416 KOG Predicted nucleic acid binding protein JGI ISS
PTHR13356Panther OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED JGI ISS
UniRef100_C6T2C8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2C8_SOYBN SoyBaseE_val: 4.00E-98ISS
UniRef100_G7J0G0UniRef Annotation by Michelle Graham. Most informative UniRef hit: SOSS complex subunit B1 n=1 Tax=Medicago truncatula RepID=G7J0G0_MEDTR SoyBaseE_val: 6.00E-75ISS

Expression Patterns of Glyma01g22580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g22580 not represented in the dataset
Glyma01g22580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g22580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g089000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g22580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g22580
>Glyma01g22580.1   sequence type=CDS   gene model=Glyma01g22580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCTTCTCAAAGACATTGTGCCTGCAGCTCAGAACAATATAGACACCAAATTTATCATTTTGGACAAAGGCAAAACCACAGTAGAAGGGCAAAACAAGATATGCCTGGCTCTTGTGGCAGATGCGACTGCAGCTATTCATTTCCAGTTCTGGGGCGACGAGTGTGATGCTTTTGATTCAGGTGACATAATTTGTCTTACCAATGGCATATTTTCGTACCAGCATGGGAACCTTATACTGAGGGCAGGGAAGAGAGGGAAACTAGTGAAGGTAGGAGGGTTCACTATGGCCTTTGTTGAGACACCAAACATGAGTGAGATTCATTGGATTCCTGACCCAAACAATTCTAAGAATTATATCCAACAATATGTAATATCTCCTGTGTCACGCATCTTTCCTCCTCCTTCTGATATATAA
Predicted protein sequences of Glyma01g22580
>Glyma01g22580.1   sequence type=predicted peptide   gene model=Glyma01g22580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILLKDIVPAAQNNIDTKFIILDKGKTTVEGQNKICLALVADATAAIHFQFWGDECDAFDSGDIICLTNGIFSYQHGNLILRAGKRGKLVKVGGFTMAFVETPNMSEIHWIPDPNNSKNYIQQYVISPVSRIFPPPSDI*






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