Glyma01g22510 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g22510

Feature Type:	gene_model
Chromosome:	Gm01
Start:	28236454
stop:	28241841
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g22510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25580	AT	Annotation by Michelle Graham. TAIR10: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein \| chr1:8997064-8999600 REVERSE LENGTH=449	SoyBase	E_val: 4.00E-172	ISS
GO:0000077	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA damage checkpoint	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0040020	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meiosis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_G7JX37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JX37_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J6R0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6R0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g22510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g22510

Paralog	Evidence	Comments
Glyma02g11140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g22510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g088200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g22510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g22510

Limit To All Plant Sequences

>Glyma01g22510.1   sequence type=CDS   gene model=Glyma01g22510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCTTGTGATCCTGGAAAGGTTATATGGAAAAGCAATCCTACCAAGCCCTGCCCAAATTGTCAACATGCTATTGACAACGATGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAAATAATTTGGCACTTGCTTGCAAAAGTTGGGGTAGGAGATTCAAAACCTCATCCCTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAAAATTTACCTGGTGTTAAGCAAGATGGAAGTGCTTCCCACTTCTTCCATAGAGCAATCAACGCTTACAACACCGGCACCCGAAAGCGCCGAAAAATACTAGGGCAAGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGAACTAAACCAGTTGTCTTTAATGGGATTCAAAAAGGCTGTAAAAAGATTATGGTTTTGTATGTTAGCAATGTAAGGGGAGGAAGAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAAGATGAAAAAGATGGAGAGTACATTATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGATAAAGATGATAAAGATGTTCCTGAAGCCACTGAAATCAATGAATCAACAATTGTGAAAGTGGATCCAGTCACTCCCAAATTTGTGACTCCTGAAACTCCTTGTAATGAAAGGTGGTGTGCAGATCTAGACCTTGGACAAGAAACACATAACAGTCCGCAGCTTCCTCAGATGGATTGTTTAGATGAGATTCAAGCTGATTACCAAGACCTTGCAAATGAATCATCTATGGTAGAAACTCAACACAATGAAGGGATGGATGATAAAGAAAAAAATACCGAGGAAGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTCGAGGCACTATCACTGTGTGACGATCTACTCCAAAGCCAGTCTCCCAGTAGAGATGGAAAACATGAAGATCATAAGAACCAACCCGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAAAATCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGCCCTTGATAAAGCAAATATAGAGAATGATACACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATTTCCTGGGGCTATGGCAAGGCAGTGAACTAA

Predicted protein sequences of Glyma01g22510

Limit To All Plant Sequences

>Glyma01g22510.1   sequence type=predicted peptide   gene model=Glyma01g22510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGTSWLVDKSRIATKIKCASGACDPGKVIWKSNPTKPCPNCQHAIDNDDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVGDSKPHPFIDEFITTLEVDDGICYTHPQNLPGVKQDGSASHFFHRAINAYNTGTRKRRKILGQDFGDVRWHKTGRTKPVVFNGIQKGCKKIMVLYVSNVRGGRAEKTNWVMHQYHLGTEEDEKDGEYIISKVFYQQQQVKLGDKDDKDVPEATEINESTIVKVDPVTPKFVTPETPCNERWCADLDLGQETHNSPQLPQMDCLDEIQADYQDLANESSMVETQHNEGMDDKEKNTEEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPSRDGKHEDHKNQPGLSVYAQLGPENLKKDIEECQNLALDKANIENDTPSEFRLSQLEFGSQDSFISWGYGKAVN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain