Glyma01g22180 - SoyBase

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Report for Sequence Feature Glyma01g22180

Feature Type:	gene_model
Chromosome:	Gm01
Start:	27781684
stop:	27784987
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g22180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13270	AT	Annotation by Michelle Graham. TAIR10: methionine aminopeptidase 1B \| chr1:4544999-4546574 FORWARD LENGTH=283	SoyBase	E_val: 1.00E-39	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009987	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0031365	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein amino acid modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004177	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity	SoyBase	N/A	ISS
GO:0008235	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity	SoyBase	N/A	ISS
PTHR10804	Panther	PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P)	JGI		ISS
PTHR10804:SF50	Panther	METHIONINE AMINOPEPTIDASE 1D, MITOCHONDRIAL	JGI		ISS
UniRef100_I1J6Q2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6Q2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JDW6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methionine aminopeptidase n=1 Tax=Glycine max RepID=I1JDW6_SOYBN	SoyBase	E_val: 4.00E-75	ISS

Expression Patterns of Glyma01g22180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g22180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma01g22180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g22180

Limit To All Plant Sequences

>Glyma01g22180.1   sequence type=CDS   gene model=Glyma01g22180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTCACTGCTTCGCTCGCTCACAACTCATTTCTGAAAATCCCAACAGCCATTCATAGCGAAGCCTCTCCGTTATGTTCATCCTTCATGGGTTCTCCGCCTACACTCTCGCGCTCTTCTACTCTTCCCGGGAACCAGTCGCTTTCGAGGAACCAATTCGTGGTTTTTGCGAGGAAGATTTCGGGATTGGAGGAGGCCATGAATATCAGAAGAGATCGTGAACTTCAAGTTGTGACAAAGTTTAAGAAAAGGCCTCCATTAAGGTGTGGGAGAGTATCACCACGCCTCCCTGTCCCTGATCACATACCAAGGCCTCCTTATGTAGGTTCAGATATACTTCCAGAAATTGCAAGTGAGCATCAAGTTCATGATTATGAAGGTATAGCTAAAATGAGGGCTGCAGGTGAGCTTGCAGCGCGTGTCTTAAACTTTGCAGGAACTATGGTTAGGGTAAAGTTTCCTCCTTGCCTACTTCCTATGTTATTTATTTACCTGGTTGATAGTAGTTGGCCAGTTAGTGGGAAAGACCAGTGGGTGAATTTGGTGGCATATTGGTTACAGCAGAATGACTGCTATTACGGCATATTTGACCTGTTTCAGGCAAGGCTATTTTGTAAACCGGTTGCTTCCTGCAAACTACTAAGTGTGCCACCCACATTATGTTTTATTTTTATTTTGACGGTAGAGGAAGGAGTTTTGAAACTTGAGATAACATCTATTTATCTCTACCCCAAGCCATATATATACTATACAGTGTGTGAAGTTCATAGCTTTGACCAAGCTTGTTCATCTTTCACTTGTCTTTGTTGTGGAAGTAGAAATTTGAGATGCATAGTCTACGCATTATGTAATATGCTGGTGATATAG

Predicted protein sequences of Glyma01g22180

Limit To All Plant Sequences

>Glyma01g22180.1   sequence type=predicted peptide   gene model=Glyma01g22180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALTASLAHNSFLKIPTAIHSEASPLCSSFMGSPPTLSRSSTLPGNQSLSRNQFVVFARKISGLEEAMNIRRDRELQVVTKFKKRPPLRCGRVSPRLPVPDHIPRPPYVGSDILPEIASEHQVHDYEGIAKMRAAGELAARVLNFAGTMVRVKFPPCLLPMLFIYLVDSSWPVSGKDQWVNLVAYWLQQNDCYYGIFDLFQARLFCKPVASCKLLSVPPTLCFIFILTVEEGVLKLEITSIYLYPKPYIYYTVCEVHSFDQACSSFTCLCCGSRNLRCIVYALCNMLVI*

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