SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13290 | AT | Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein | chr1:4550366-4551527 REVERSE LENGTH=302 | SoyBase | E_val: 4.00E-117 | ISS |
| GO:0010087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis | SoyBase | N/A | ISS |
| GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0010588 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot development | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR10593 | Panther | SERINE/THREONINE-PROTEIN KINASE RIO | JGI | ISS | |
| UniRef100_G7JYA5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger-like protein n=1 Tax=Medicago truncatula RepID=G7JYA5_MEDTR | SoyBase | E_val: 1.00E-139 | ISS |
| UniRef100_UPI0002337A2C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337A2C related cluster n=1 Tax=unknown RepID=UPI0002337A2C | SoyBase | E_val: 0 | ISS |
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Glyma01g22120 not represented in the dataset |
Glyma01g22120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g086800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g22120.2 sequence type=CDS gene model=Glyma01g22120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCTCACCACCCTTTCTCCTACATATCCTCTTGTCCTGGTAGTAGTACTAGTGCCTTCTTGGAACCTCATCATCACCATCATCATGAAGTTGTGGATGAAGCCTCTATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACAACACAAAAACCACTACCAAGCCACCACTTCCTCCTCCTCTCACCACCCTTCTTCCATTCTGCACCACCATTACCAGCAAAATCCTAGTACTACTACTGCTACCACCTCTGATGATCATCATCACCAGAGAGGTGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAGTCCCACCACCACAACTTCTTCAACAAACAGTGCCACCACCCCAACTACTACTAGCAAGTTGCCTGATCTTCATTTGGCCTCTGCTGCCCCCAACATTCAGGGCCAGTATTGGATCCCTTCTCCTGCTCAAATCCTCATTGGCCCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGCTCGCAATACAGAAAAGGCCCCGAATCGCTTCGGGGCGCAAAGCCAGCATCCTCGATGCTGCGGCTTCCCTGCTACTGCTGCGCGGAGGGCTGCAAGAACAACATCGAGCACCCAAGGTCGAGGCCGCTGAAGGACTTCAGGACGCTCCAGACGCACTACAAGAGGAAGCACGGTGCGAAGCCGTTCGGGTGCCGGAAGTGCGGGAAGCCTTTTGCAGTGAGAGGTGACTGGAGGACGCACGAGAAGAACTGCGGGAGGCTCTGGTTCTGCATCTGCGGGTCTGATTTCAAGCACAAGAGGTCTCTCAAGGACCATGTTCGCGCCTTTGGGGATGGACATGCTCCGCACACTGTGGAGAGCTGTGATCGGGTGGGGGAGGATGAGGATGATGAGGAGTTGGAAGTGGAGGATGAGGAGGAGGAGGATTATCATAGTAATGATTTGGTTTTTGGTTTTAATTAA
>Glyma01g22120.2 sequence type=predicted peptide gene model=Glyma01g22120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQAHHPFSYISSCPGSSTSAFLEPHHHHHHEVVDEASISLSLGPPGQQQHKNHYQATTSSSSHHPSSILHHHYQQNPSTTTATTSDDHHHQRGGVTVALHIGLPSPTTTTSSTNSATTPTTTSKLPDLHLASAAPNIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDRVGEDEDDEELEVEDEEEEDYHSNDLVFGFN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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