Glyma01g22120 - SoyBase

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Report for Sequence Feature Glyma01g22120

Feature Type:	gene_model
Chromosome:	Gm01
Start:	27653935
stop:	27655968
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g22120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13290	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr1:4550366-4551527 REVERSE LENGTH=302	SoyBase	E_val: 4.00E-117	ISS
GO:0010087	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis	SoyBase	N/A	ISS
GO:0010305	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0010588	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
UniRef100_G7JYA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger-like protein n=1 Tax=Medicago truncatula RepID=G7JYA5_MEDTR	SoyBase	E_val: 1.00E-139	ISS
UniRef100_UPI0002337A2C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337A2C related cluster n=1 Tax=unknown RepID=UPI0002337A2C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g22120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g22120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g086800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g22120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g22120

Limit To All Plant Sequences

>Glyma01g22120.2   sequence type=CDS   gene model=Glyma01g22120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGCTCACCACCCTTTCTCCTACATATCCTCTTGTCCTGGTAGTAGTACTAGTGCCTTCTTGGAACCTCATCATCACCATCATCATGAAGTTGTGGATGAAGCCTCTATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACAACACAAAAACCACTACCAAGCCACCACTTCCTCCTCCTCTCACCACCCTTCTTCCATTCTGCACCACCATTACCAGCAAAATCCTAGTACTACTACTGCTACCACCTCTGATGATCATCATCACCAGAGAGGTGGTGTAACTGTGGCCCTTCACATTGGCCTTCCCAGTCCCACCACCACAACTTCTTCAACAAACAGTGCCACCACCCCAACTACTACTAGCAAGTTGCCTGATCTTCATTTGGCCTCTGCTGCCCCCAACATTCAGGGCCAGTATTGGATCCCTTCTCCTGCTCAAATCCTCATTGGCCCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGCTCGCAATACAGAAAAGGCCCCGAATCGCTTCGGGGCGCAAAGCCAGCATCCTCGATGCTGCGGCTTCCCTGCTACTGCTGCGCGGAGGGCTGCAAGAACAACATCGAGCACCCAAGGTCGAGGCCGCTGAAGGACTTCAGGACGCTCCAGACGCACTACAAGAGGAAGCACGGTGCGAAGCCGTTCGGGTGCCGGAAGTGCGGGAAGCCTTTTGCAGTGAGAGGTGACTGGAGGACGCACGAGAAGAACTGCGGGAGGCTCTGGTTCTGCATCTGCGGGTCTGATTTCAAGCACAAGAGGTCTCTCAAGGACCATGTTCGCGCCTTTGGGGATGGACATGCTCCGCACACTGTGGAGAGCTGTGATCGGGTGGGGGAGGATGAGGATGATGAGGAGTTGGAAGTGGAGGATGAGGAGGAGGAGGATTATCATAGTAATGATTTGGTTTTTGGTTTTAATTAA

Predicted protein sequences of Glyma01g22120

Limit To All Plant Sequences

>Glyma01g22120.2   sequence type=predicted peptide   gene model=Glyma01g22120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQAHHPFSYISSCPGSSTSAFLEPHHHHHHEVVDEASISLSLGPPGQQQHKNHYQATTSSSSHHPSSILHHHYQQNPSTTTATTSDDHHHQRGGVTVALHIGLPSPTTTTSSTNSATTPTTTSKLPDLHLASAAPNIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDRVGEDEDDEELEVEDEEEEDYHSNDLVFGFN*

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