Report for Sequence Feature Glyma01g21900
Feature Type: gene_model
Chromosome: Gm01
Start: 27377289
stop: 27379936
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g21900
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G25550 AT
Annotation by Michelle Graham. TAIR10: myb-like transcription factor family protein | chr1:8976644-8977942 FORWARD LENGTH=344
SoyBase E_val: 2.00E-84 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0010167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nitrate
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_G7JYB4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR14 n=1 Tax=Medicago truncatula RepID=G7JYB4_MEDTR
SoyBase E_val: 6.00E-147 ISS
UniRef100_I1J6P8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6P8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g21900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma01g21900 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g086700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g21900
Coding sequences of Glyma01g21900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g21900.1 sequence type=CDS gene model=Glyma01g21900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAATTTGCTCAGAAAATGCAACCCTTGAAAATGGGGTTCCTTCAGTACATCGAAGCATTGGAGGAAGAAAGAAGGAAAATTCAAGTTTTCCCTAAAGAGCTTCCTTTGTCATTAGAGCTTGTCACGCAAGCAATTGAGGCTTGTAGGCAGCAATTGGCTGGAACGGTAGCGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAACAGACATCAACGGATGGACCTGTTTTTGAGGAGTTCATTCCTCTAAAGAAAAGGGCATCTCAAGATTCTGTTGAAGAAGAAGATGAAGATGAAGAACATTTTCATAAACACAAAAAAACCGCCACTGATAAAAAAAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCCCCTCCTACCAAAGAGGACGTTGTTGTGCCTAGGAAAACTGATGTTGTGGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGGTGATGCAAAGGCTAGTATTAATAATGATGCATCAGCAATTGGTAAAGCACCCTCTTCACCACCAGTGCCTGCTACAAGTTCTACAGGACCAGTGAGAGTAGAAAACAAAAAAGAAGAGAAAGGACAAGCTCAGAGAAAGCAACGCAGGTGTTGGTCACAGGAATTGCACAAGAGATTCTTGCATGCACTTCAACAACTTGGGGGTGCAGACTCTGCCACGCCTAAACAGATCAGGGAGCTGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAATGCAAGTTCACAAGCAGGCCCTTTATTTCTTGTGGGGAACATTTTTGTTCAGCCACCAGAATATGCTGCAGTAGCAACCACCTCAACAGCATCTGGAGAGGAATTGACCACAGTTACTACTACTACTGCTCCAACTGGAATATATGCACCTGTGGCTGCACACCCTCCAGCTGTCACCCACACATTACCAATTATGAAGCAGAAGGAGCATTCACACTCTGAGGAAAGACCTAATCATAGTGTTCTTTCAAACTCACCTGCCTCATCATCCTCCACACACACCATCACAACTTCACCACCTGTCCCCAATTGA
Predicted protein sequences of Glyma01g21900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g21900.1 sequence type=predicted peptide gene model=Glyma01g21900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQFAQKMQPLKMGFLQYIEALEEERRKIQVFPKELPLSLELVTQAIEACRQQLAGTVAEYNLNGQSECSEQTSTDGPVFEEFIPLKKRASQDSVEEEDEDEEHFHKHKKTATDKKKSDWLRSVQLWNPNPPPTKEDVVVPRKTDVVEVKRNGGAFQPFQREEKSGDAKASINNDASAIGKAPSSPPVPATSSTGPVRVENKKEEKGQAQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNASSQAGPLFLVGNIFVQPPEYAAVATTSTASGEELTTVTTTTAPTGIYAPVAAHPPAVTHTLPIMKQKEHSHSEERPNHSVLSNSPASSSSTHTITTSPPVPN*