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Report for Sequence Feature Glyma01g21790

Feature Type:gene_model
Chromosome:Gm01
Start:27193610
stop:27195324
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60450AT Annotation by Michelle Graham. TAIR10: auxin response factor 4 | chr5:24308558-24312187 REVERSE LENGTH=788 SoyBaseE_val: 3.00E-29ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009725GO-bp Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010158GO-bp Annotation by Michelle Graham. GO Biological Process: abaxial cell fate specification SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_B9SK50UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9SK50_RICCO SoyBaseE_val: 3.00E-30ISS
UniRef100_I1M4M7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4M7_SOYBN SoyBaseE_val: 3.00E-38ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g21790.1   sequence type=CDS   gene model=Glyma01g21790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGGCCAATAAGGAGAATGATGAGGTTTATACATAGGTTACTTTGCTTCCCCAGGCTGAGGTTGTATTTAGAGGGAAAAGAGCTTGAGGAATTGGGAACATATGAAGAGGGAAATGAAACAACACCTACAAAGTCAACCCCTCACATGTTTCGCAAAACTCTTACAACCTCAGATACCAACACTCATGGGGGGTTCTTTGTCCCTCGCAGAGCTGTTGAAGACTGTTTTCCTCGTTTGGATTATAAGCAGCAAAGACCTTCTCAAGAGCTTGTTGCCAAAGATTTGTATGGATTTTGTTTTAAGAATATAATAAACACTGATAGTGTAAATAATTGTTATACTATCATAGTGTCACTTAATTTCAGACCGCCAGCCATTGTATACTCTTTATTGATTATTAATATTAAGGAAACTTCTTGTCATAATGGGTCTAGGGGAATCCTTCTAGAGGCCCCAAAAAGGGGTGGTGGACTGTGGACTGCATTGCTTACCTGGCCAATTGGAGAGGATTCTACCATATTTATATTGCATCGGACATTCATTTTCTTGAGGTCATGCATGTTGTTTGACACTTGA

>Glyma01g21790.1   sequence type=predicted peptide   gene model=Glyma01g21790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRPIRRMMRFIHRLLCFPRLRLYLEGKELEELGTYEEGNETTPTKSTPHMFRKTLTTSDTNTHGGFFVPRRAVEDCFPRLDYKQQRPSQELVAKDLYGFCFKNIINTDSVNNCYTIIVSLNFRPPAIVYSLLIINIKETSCHNGSRGILLEAPKRGGGLWTALLTWPIGEDSTIFILHRTFIFLRSCMLFDT*







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