Report for Sequence Feature Glyma01g21790
Feature Type: gene_model
Chromosome: Gm01
Start: 27193610
stop: 27195324
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g21790
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G60450 AT
Annotation by Michelle Graham. TAIR10: auxin response factor 4 | chr5:24308558-24312187 REVERSE LENGTH=788
SoyBase E_val: 3.00E-29 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009725 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus
SoyBase N/A ISS
GO:0010050 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative phase change
SoyBase N/A ISS
GO:0010158 GO-bp
Annotation by Michelle Graham. GO Biological Process: abaxial cell fate specification
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
UniRef100_B9SK50 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9SK50_RICCO
SoyBase E_val: 3.00E-30 ISS
UniRef100_I1M4M7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4M7_SOYBN
SoyBase E_val: 3.00E-38 ISS
Expression Patterns of Glyma01g21790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma01g21790 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma01g21790
Coding sequences of Glyma01g21790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g21790.1 sequence type=CDS gene model=Glyma01g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATAGGCCAATAAGGAGAATGATGAGGTTTATACATAGGTTACTTTGCTTCCCCAGGCTGAGGTTGTATTTAGAGGGAAAAGAGCTTGAGGAATTGGGAACATATGAAGAGGGAAATGAAACAACACCTACAAAGTCAACCCCTCACATGTTTCGCAAAACTCTTACAACCTCAGATACCAACACTCATGGGGGGTTCTTTGTCCCTCGCAGAGCTGTTGAAGACTGTTTTCCTCGTTTGGATTATAAGCAGCAAAGACCTTCTCAAGAGCTTGTTGCCAAAGATTTGTATGGATTTTGTTTTAAGAATATAATAAACACTGATAGTGTAAATAATTGTTATACTATCATAGTGTCACTTAATTTCAGACCGCCAGCCATTGTATACTCTTTATTGATTATTAATATTAAGGAAACTTCTTGTCATAATGGGTCTAGGGGAATCCTTCTAGAGGCCCCAAAAAGGGGTGGTGGACTGTGGACTGCATTGCTTACCTGGCCAATTGGAGAGGATTCTACCATATTTATATTGCATCGGACATTCATTTTCTTGAGGTCATGCATGTTGTTTGACACTTGA
Predicted protein sequences of Glyma01g21790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g21790.1 sequence type=predicted peptide gene model=Glyma01g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNRPIRRMMRFIHRLLCFPRLRLYLEGKELEELGTYEEGNETTPTKSTPHMFRKTLTTSDTNTHGGFFVPRRAVEDCFPRLDYKQQRPSQELVAKDLYGFCFKNIINTDSVNNCYTIIVSLNFRPPAIVYSLLIINIKETSCHNGSRGILLEAPKRGGGLWTALLTWPIGEDSTIFILHRTFIFLRSCMLFDT*