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Report for Sequence Feature Glyma01g21660

Feature Type:gene_model
Chromosome:Gm01
Start:27033744
stop:27042354
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g21660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15550AT Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:5059051-5062003 REVERSE LENGTH=433 SoyBaseE_val: 0ISS
GO:0000478GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0051604GO-bp Annotation by Michelle Graham. GO Biological Process: protein maturation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005834GO-cc Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG0313 KOG Microtubule binding protein YTM1 (contains WD40 repeats) JGI ISS
PTHR19855Panther WD40 REPEAT PROTEIN 12, 37 JGI ISS
PTHR19855:SF11Panther WD40 REPEAT PROTEIN 12 JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
PF08154PFAM NLE (NUC135) domain JGI ISS
UniRef100_G7KYJ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein wdr12 n=2 Tax=Medicago truncatula RepID=G7KYJ6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1J6P4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6P4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g21660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g21660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g086000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g21660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g21660
>Glyma01g21660.1   sequence type=CDS   gene model=Glyma01g21660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGAACGAAGAGAGTGGTGAAGGAAGCGCGAGGAGGGTCCAAGTGCGCTTCGTGACGAAGTTAGGCGAGCCGTACAAAGTTCCGACCACCGCCATCGCCATCCCCGCCGACCTCGCTCGATTTGGCCTCTCCTCACTCGTCAACGCACTCCTTCAATCCAACGACGCTGATCATCAGCCGGAGCCGTTTGATTTTTTAATCGATGGTGAGTTCGTCCGGATGTCGCTCGAGCAGTTTCTTTTGGCCAAGGGAATCTCTGCGGAAAGGATATTGGAAATTGAGTACGCAAGGGCTGTCGCTCCGCGGAAGGAGGAGGACCCTTCTCTACATGATGATTGGGTTAGTGCTGTTGATGGTTCTTCTTCTCGGTTCTTTTTGACCGGATGTTATGATGGTTTAGGGAGGGTATGGAAAGGTGCTGGATTATGTACCCATATATTGGAGGGACATAGTGACGCAATCACTTCCGTTAGTATCATCAATCCAAAAGGTGAGGAAACTGTTACAGTAGCTACTGCTTCGAAAGACAGGACATTGAGGCTATGGAAGCTCAATGCTGGGGATCATGTAAACAATCCTATGAGGGTTAGGGCTTACAAAATCTTGCGTGGTCATAAGTCTTCTGTACAGTGTGTTGCAGTGCAGACTGCTGGAGAGATGGTTTGTTCAGCTTCTTGGGATTGCACCATCAATCTATGGCAAACTAATGACTTTAATGCGGAAGATGACCTAGTGTCTAAAAAGAGAAAAATTGGAGCTCAAGTTGAGGAGTCCCAACTAGAGGGAGAGGCTTTTACTACCCTTGTGGGCCATACACAGTGTGTGTCTGCTGTGGTTTGGCCACAACGGGAGTCAATTTATTCTGCATCTTGGGATCATTCTATTAGGAAATGGGATGTTGAGACAGGAAAAAACTTGACAGATTTATTCTGTGGGAAGGTTCTCAACTGCCTTGATATTGGTGGGGAAGGTTCTACTCTGATAGCTGCTGGTGGTTCTGATCCTGTCATTAGGATTTGGGATCCTCGTAAACCAGGCACTTCTGCTCCTGTTTTTCAGTTTTCTTCTCATATGTCCTGGGTTTCGGCTTGCAAATGGCATGATCAGTCTTGGTTTCATTTACTTTCTGCATCCTATGACGGGAAAGTTATGTTGTGGGATCTGAGAACTGCGTGGCCTCTTTCAGTCATTGAATCGCACAGTGATAAGGTATTGTCTGCTGATTGGTGGAAAAGTAACAGTGTTATCAGTGGTGGAGCAGACTCAAAACTTTGCATTTCTTCAGAAATTCCTGTACAATAG
Predicted protein sequences of Glyma01g21660
>Glyma01g21660.1   sequence type=predicted peptide   gene model=Glyma01g21660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMNEESGEGSARRVQVRFVTKLGEPYKVPTTAIAIPADLARFGLSSLVNALLQSNDADHQPEPFDFLIDGEFVRMSLEQFLLAKGISAERILEIEYARAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAITSVSIINPKGEETVTVATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKSSVQCVAVQTAGEMVCSASWDCTINLWQTNDFNAEDDLVSKKRKIGAQVEESQLEGEAFTTLVGHTQCVSAVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSTLIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSVIESHSDKVLSADWWKSNSVISGGADSKLCISSEIPVQ*






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