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A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G25500 | AT | Annotation by Michelle Graham. TAIR10: Plasma-membrane choline transporter family protein | chr1:8955437-8957793 REVERSE LENGTH=488 | SoyBase | E_val: 0 | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
KOG1362 | KOG | Choline transporter-like protein | JGI | ISS | |
PTHR12385 | Panther | CTL TRANSPORTER | JGI | ISS | |
PTHR12385:SF4 | Panther | gb def: agcp5661 [anopheles gambiae str. pest] | JGI | ISS | |
PF04515 | PFAM | Plasma-membrane choline transporter | JGI | ISS | |
UniRef100_G7JYE2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Choline transporter-like protein 5-A n=1 Tax=Medicago truncatula RepID=G7JYE2_MEDTR | SoyBase | E_val: 0 | ISS |
UniRef100_G7JYE2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Choline transporter-like protein 5-A n=1 Tax=Medicago truncatula RepID=G7JYE2_MEDTR | SoyBase | E_val: 0 | ISS |
Glyma01g21360 not represented in the dataset |
Glyma01g21360 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.01g084500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g21360.2 sequence type=transcript gene model=Glyma01g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTTGCTTTACAATAATTATTAGTCCTCATACTGATACCATTCCACTGCCACCCCACCCCATTAGCTTCACAACCTCATACGCATGGCAATGCCATAATCATGGCGCGTGGCACCTCTCACTAAAATGCCCCCATTGAAAGTTTTGGCCTTTGCTATCATGAATTCATGATCCTTTCATCGAATTGATATACCTCTTTCTCTCTCTACAACAAGGTGCTATGTTTCTACTTCTCTTACAGTGGTGAACTTTACCTATTTCTCTTCCACTCTCTACTGTTTCACCACCAACAATTAGGACTATATAGAAGTTGCCACACAGTGAATTGGTGACAAGAAATGGAGCAACAACGGCGTTGGCACGACGTGTTCTGGTTAGGGATATTTGTGATCCATTTGGTTGGTATGGGTTTGGTTCTTGGGGTTTTAGGCCTCAACAGGTTCAAGCAAAAGAACAGGCTTGACATTGATAAGTACACCTACCGGTTCATGGAGAATGAGGCTGGTTTGACGGAGGATTACTGGCCGCTTTATGCAGTGGCCGGTGGCCTAGGAACCGCCCTTGGATGGAGTTGGTTGCTGCTGTTAGGCTCGCGCGCCACCCAGATGATGAAGGTGTCTGTGCACATACTCACCACTTACCTTGCTGTGATCAGTGTTTTGTGTTTCTGGGCAGAGCAGTTTTTCTGGGGTGTTGCCTTTGCTATTGGGGCAGCCCTTCAGTTCTTGTATGTGATTTCTGTCATAGAAAGACTTCCATTTACAATGTTGGTTCTGCAAAAGGCTGTCAAGATGGTATGGAATATTCCTGAAGTTATGAGAGTAGCATATGCATTTATGCTTGTTGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCTGCTGGTGTTGTGGCTTCAAGCATGGGTGACGGTGGACGCTGGTGGCTTCTAGTGGTCCTCTCTATAAGCTTATTTTGGACAGGTGCTGTACTCTGCAACACTGTGCATGTTATAGTGTCTGGGACAGTGGTTCTTGTTAGTATCCATGGTGGTAGAGAGGCTGTATCAATTCCCGCTAACTCCTTTATGAAATGTCTACAATATGCTTTAACGACTTCTTTTGGGAGCATTTGTTATGGTTCATTATTCACAGCTGCAATTAGGACACTGCGATGGGAGATAAGAGGAATCCGATCCAGGATAGGCAATAATGAATGTTTGCTTTGCTGTGTTGATTTCGTTTTCCATCTTGTGGAGACTCTTGTCCGTTTCTTTAACAAGTATGCTTATGTTCAGATTGCTGTTTATGGTAAAAGCTTTAACCGTTCCGCTAGAGATGCGTGGGAGCTATTCCAGTCAACTGGAGTAGAAACACTTGTGGCCTATGATTGTTCGGGTGCTGTGCTGCTAATGGGAACCATTTTTGGTGGGCTAATAACCGGGACTTGCTCTGGTGTTTGGGCATGGATTAAATGGAATGATAGGGCTTTTATGATTGGGTCCACGTCTATGCTCATGGGAATGATCTTGGTTGGAGTTGCTATGGTTGTGGTGGAAAGTGCTGTTACATCCATATACATATGTTATGCAGAAGATCCCTTATTGATTCAGAGGTGGGACACTGAGTTTTTCAACCAGATGTCTGAGACACTGCACCAACGACTTCAACATAGGAGTTCACGTGGTGCAAGGGAAGTTTTAACCCACGATCAGCTTGATTCACACGCCTCTATTTGAGGAATCATTTGATGTCACAACACTACACACTTTAACACTTGTCCATTTTAATGTCAAATCCTTTAGCCTTTACGCATTAGCATCTTTTTGTTTCATTTTGTGACACGTTGATAGGGTAACTTCATGCTTCAAATAGGGGGGAAATTTGATGGTTGTGACTGGCTTTGAGCAATGTTGGGTTGGGTATGTAAGTTCCATTGCTCCTTGGGTTGCCTCAAATATGAGTCATTTTGTACCCCTAAAAAACTAAAGAAAAAGAAACTGGAGACAGTGATGGTCTTGATTATTGGTGTGTATGATATTTAATATAATTTACAAAATGTACAGTATTTTTTTCCTGCCGAAGCACAAAATGTACAGTTTCCTTCAATTTATGGCAAAAAAGG >Glyma01g21360.3 sequence type=transcript gene model=Glyma01g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTTGCTTTACAATAATTATTAGTCCTCATACTGATACCATTCCACTGCCACCCCACCCCATTAGCTTCACAACCTCATACGCATGGCAATGCCATAATCATGGCGCGTGGCACCTCTCACTAAAATGCCCCCATTGAAAGTTTTGGCCTTTGCTATCATGAATTCATGATCCTTTCATCGAATTGATATACCTCTTTCTCTCTCTACAACAAGGTGCTATGTTTCTACTTCTCTTACAGTGGTGAACTTTACCTATTTCTCTTCCACTCTCTACTGTTTCACCACCAACAATTAGGACTATATAGAAGTTGCCACACAGTGAATTGGTGACAAGAAATGGAGCAACAACGGCGTTGGCACGACGTGTTCTGGTTAGGGATATTTGTGATCCATTTGGTTGGTATGGGTTTGGTTCTTGGGGTTTTAGGCCTCAACAGGTTCAAGCAAAAGAACAGGCTTGACATTGATAAGTACACCTACCGGTTCATGGAGAATGAGGCTGGTTTGACGGAGGATTACTGGCCGCTTTATGCAGTGGCCGGTGGCCTAGGAACCGCCCTTGGATGGAGTTGGTTGCTGCTGTTAGGCTCGCGCGCCACCCAGATGATGAAGGTGTCTGTGCACATACTCACCACTTACCTTGCTGTGATCAGTGTTTTGTGTTTCTGGGCAGAGCAGTTTTTCTGGGGTGTTGCCTTTGCTATTGGGGCAGCCCTTCAGTTCTTGTATGTGATTTCTGTCATAGAAAGACTTCCATTTACAATGTTGGTTCTGCAAAAGGCTGTCAAGATGGTATGGAATATTCCTGAAGTTATGAGAGTAGCATATGCATTTATGCTTGTTGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCTGCTGGTGTTGTGGCTTCAAGCATGGGTGACGGTGGACGCTGGTGGCTTCTAGTGGTCCTCTCTATAAGCTTATTTTGGACAGGTGCTGTACTCTGCAACACTGTGCATGTTATAGTGTCTGGGACAGTGGTTCTTGTTAGTATCCATGGTGGTAGAGAGGCTGTATCAATTCCCGCTAACTCCTTTATGAAATGTCTACAATATGCTTTAACGACTTCTTTTGGGAGCATTTGTTATGGTTCATTATTCACAGCTGCAATTAGGACACTGCGATGGGAGATTGCTGTTTATGGTAAAAGCTTTAACCGTTCCGCTAGAGATGCGTGGGAGCTATTCCAGTCAACTGGAGTAGAAACACTTGTGGCCTATGATTGTTCGGGTGCTGTGCTGCTAATGGGAACCATTTTTGGTGGGCTAATAACCGGGACTTGCTCTGGTGTTTGGGCATGGATTAAATGGAATGATAGGGCTTTTATGATTGGGTCCACGTCTATGCTCATGGGAATGATCTTGGTTGGAGTTGCTATGGTTGTGGTGGAAAGTGCTGTTACATCCATATACATATGTTATGCAGAAGATCCCTTATTGATTCAGAGGTGGGACACTGAGTTTTTCAACCAGATGTCTGAGACACTGCACCAACGACTTCAACATAGGAGTTCACGTGGTGCAAGGGAAGTTTTAACCCACGATCAGCTTGATTCACACGCCTCTATTTGAGGAATCATTTGATGTCACAACACTACACACTTTAACACTTGTCCATTTTAATGTCAAATCCTTTAGCCTTTACGCATTAGCATCTTTTTGTTTCATTTTGTGACACGTTGATAGGGTAACTTCATGCTTCAAATAGGGGGGAAATTTGATGGTTGTGACTGGCTTTGAGCAATGTTGGGTTGGGTATGTAAGTTCCATTGCTCCTTGGGTTGCCTCAAATATGAGTCATTTTGTACCCCTAAAAAACTAAAGAAAAAGAAACTGGAGACAGTGATGGTCTTGATTATTGGTGTGTATGATATTTAATATAATTTACAAAATGTACAGTATTTTTTTCCTGCCGAAGCACAAAATGTACAGTTTCCTTCAATTTATGGCAAAAAAGG
>Glyma01g21360.1 sequence type=CDS gene model=Glyma01g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAACAACGGCGTTGGCACGACGTGTTCTGGTTAGGGATATTTGTGATCCATTTGGTTGGTATGGGTTTGGTTCTTGGGGTTTTAGGCCTCAACAGGTTCAAGCAAAAGAACAGGCTTGACATTGATAAGTACACCTACCGGTTCATGGAGAATGAGGCTGGTTTGACGGAGGATTACTGGCCGCTTTATGCAGTGGCCGGTGGCCTAGGAACCGCCCTTGGATGGAGTTGGTTGCTGCTGTTAGGCTCGCGCGCCACCCAGATGATGAAGGTGTCTGTGCACATACTCACCACTTACCTTGCTGTGATCAGTGTTTTGTGTTTCTGGGCAGAGCAGTTTTTCTGGGGTGTTGCCTTTGCTATTGGGGCAGCCCTTCAGTTCTTGTATGTGATTTCTGTCATAGAAAGACTTCCATTTACAATGTTGGTTCTGCAAAAGGCTGTCAAGATGGTATGGAATATTCCTGAAGTTATGAGAGTAGCATATGCATTTATGCTTGTTGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCTGCTGGTGTTGTGGCTTCAAGCATGGGTGACGGTGGACGCTGGTGGCTTCTAGTGGTCCTCTCTATAAGCTTATTTTGGACAGGTGCTGTACTCTGCAACACTGTGCATGTTATAGTGTCTGGGACAGTGGTTCTTGTTAGTATCCATGGTGGTAGAGAGGCTGTATCAATTCCCGCTAACTCCTTTATGAAATGTCTACAATATGCTTTAACGACTTCTTTTGGGAGCATTTGTTATGGTTCATTATTCACAGCTGCAATTAGGACACTGCGATGGGAGATAAGAGGAATCCGATCCAGGATAGGCAATAATGAATGTTTGCTTTGCTGTGTTGATTTCGTTTTCCATCTTGTGGAGACTCTTGTCCGTTTCTTTAACAAGTATGCTTATGTTCAGATTGCTGTTTATGGTAAAAGCTTTAACCGTTCCGCTAGAGATGCGTGGGAGCTATTCCAGTCAACTGGAGTAGAAACACTTGTGGCCTATGATTGTTCGGGTGCTGTGCTGCTAATGGGAACCATTTTTGGTGGGCTAATAACCGGGACTTGCTCTGGTGTTTGGGCATGGATTAAATGGAATGATAGGGCTTTTATGATTGGGTCCACGTCTATGCTCATGGGAATGATCTTGGTTGGAGTTGCTATGGTTGTGGTGGAAAGTGCTGTTACATCCATATACATATGTTATGCAGAAGATCCCTTATTGATTCAGAGGTGGGACACTGAGTTTTTCAACCAGATGTCTGAGACACTGCACCAACGACTTCAACATAGGAGTTCACGTGGTGCAAGGGAAGTTTTAACCCACGATCAGCTTGATTCACACGCCTCTATTTGA >Glyma01g21360.2 sequence type=CDS gene model=Glyma01g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAACAACGGCGTTGGCACGACGTGTTCTGGTTAGGGATATTTGTGATCCATTTGGTTGGTATGGGTTTGGTTCTTGGGGTTTTAGGCCTCAACAGGTTCAAGCAAAAGAACAGGCTTGACATTGATAAGTACACCTACCGGTTCATGGAGAATGAGGCTGGTTTGACGGAGGATTACTGGCCGCTTTATGCAGTGGCCGGTGGCCTAGGAACCGCCCTTGGATGGAGTTGGTTGCTGCTGTTAGGCTCGCGCGCCACCCAGATGATGAAGGTGTCTGTGCACATACTCACCACTTACCTTGCTGTGATCAGTGTTTTGTGTTTCTGGGCAGAGCAGTTTTTCTGGGGTGTTGCCTTTGCTATTGGGGCAGCCCTTCAGTTCTTGTATGTGATTTCTGTCATAGAAAGACTTCCATTTACAATGTTGGTTCTGCAAAAGGCTGTCAAGATGGTATGGAATATTCCTGAAGTTATGAGAGTAGCATATGCATTTATGCTTGTTGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCTGCTGGTGTTGTGGCTTCAAGCATGGGTGACGGTGGACGCTGGTGGCTTCTAGTGGTCCTCTCTATAAGCTTATTTTGGACAGGTGCTGTACTCTGCAACACTGTGCATGTTATAGTGTCTGGGACAGTGGTTCTTGTTAGTATCCATGGTGGTAGAGAGGCTGTATCAATTCCCGCTAACTCCTTTATGAAATGTCTACAATATGCTTTAACGACTTCTTTTGGGAGCATTTGTTATGGTTCATTATTCACAGCTGCAATTAGGACACTGCGATGGGAGATAAGAGGAATCCGATCCAGGATAGGCAATAATGAATGTTTGCTTTGCTGTGTTGATTTCGTTTTCCATCTTGTGGAGACTCTTGTCCGTTTCTTTAACAAGTATGCTTATGTTCAGATTGCTGTTTATGGTAAAAGCTTTAACCGTTCCGCTAGAGATGCGTGGGAGCTATTCCAGTCAACTGGAGTAGAAACACTTGTGGCCTATGATTGTTCGGGTGCTGTGCTGCTAATGGGAACCATTTTTGGTGGGCTAATAACCGGGACTTGCTCTGGTGTTTGGGCATGGATTAAATGGAATGATAGGGCTTTTATGATTGGGTCCACGTCTATGCTCATGGGAATGATCTTGGTTGGAGTTGCTATGGTTGTGGTGGAAAGTGCTGTTACATCCATATACATATGTTATGCAGAAGATCCCTTATTGATTCAGAGGTGGGACACTGAGTTTTTCAACCAGATGTCTGAGACACTGCACCAACGACTTCAACATAGGAGTTCACGTGGTGCAAGGGAAGTTTTAACCCACGATCAGCTTGATTCACACGCCTCTATTTGA >Glyma01g21360.3 sequence type=CDS gene model=Glyma01g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAACAACGGCGTTGGCACGACGTGTTCTGGTTAGGGATATTTGTGATCCATTTGGTTGGTATGGGTTTGGTTCTTGGGGTTTTAGGCCTCAACAGGTTCAAGCAAAAGAACAGGCTTGACATTGATAAGTACACCTACCGGTTCATGGAGAATGAGGCTGGTTTGACGGAGGATTACTGGCCGCTTTATGCAGTGGCCGGTGGCCTAGGAACCGCCCTTGGATGGAGTTGGTTGCTGCTGTTAGGCTCGCGCGCCACCCAGATGATGAAGGTGTCTGTGCACATACTCACCACTTACCTTGCTGTGATCAGTGTTTTGTGTTTCTGGGCAGAGCAGTTTTTCTGGGGTGTTGCCTTTGCTATTGGGGCAGCCCTTCAGTTCTTGTATGTGATTTCTGTCATAGAAAGACTTCCATTTACAATGTTGGTTCTGCAAAAGGCTGTCAAGATGGTATGGAATATTCCTGAAGTTATGAGAGTAGCATATGCATTTATGCTTGTTGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCTGCTGGTGTTGTGGCTTCAAGCATGGGTGACGGTGGACGCTGGTGGCTTCTAGTGGTCCTCTCTATAAGCTTATTTTGGACAGGTGCTGTACTCTGCAACACTGTGCATGTTATAGTGTCTGGGACAGTGGTTCTTGTTAGTATCCATGGTGGTAGAGAGGCTGTATCAATTCCCGCTAACTCCTTTATGAAATGTCTACAATATGCTTTAACGACTTCTTTTGGGAGCATTTGTTATGGTTCATTATTCACAGCTGCAATTAGGACACTGCGATGGGAGATTGCTGTTTATGGTAAAAGCTTTAACCGTTCCGCTAGAGATGCGTGGGAGCTATTCCAGTCAACTGGAGTAGAAACACTTGTGGCCTATGATTGTTCGGGTGCTGTGCTGCTAATGGGAACCATTTTTGGTGGGCTAATAACCGGGACTTGCTCTGGTGTTTGGGCATGGATTAAATGGAATGATAGGGCTTTTATGATTGGGTCCACGTCTATGCTCATGGGAATGATCTTGGTTGGAGTTGCTATGGTTGTGGTGGAAAGTGCTGTTACATCCATATACATATGTTATGCAGAAGATCCCTTATTGATTCAGAGGTGGGACACTGAGTTTTTCAACCAGATGTCTGAGACACTGCACCAACGACTTCAACATAGGAGTTCACGTGGTGCAAGGGAAGTTTTAACCCACGATCAGCTTGATTCACACGCCTCTATTTGA
>Glyma01g21360.1 sequence type=predicted peptide gene model=Glyma01g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQQRRWHDVFWLGIFVIHLVGMGLVLGVLGLNRFKQKNRLDIDKYTYRFMENEAGLTEDYWPLYAVAGGLGTALGWSWLLLLGSRATQMMKVSVHILTTYLAVISVLCFWAEQFFWGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWNIPEVMRVAYAFMLVVLLWMALWSFGAAGVVASSMGDGGRWWLLVVLSISLFWTGAVLCNTVHVIVSGTVVLVSIHGGREAVSIPANSFMKCLQYALTTSFGSICYGSLFTAAIRTLRWEIRGIRSRIGNNECLLCCVDFVFHLVETLVRFFNKYAYVQIAVYGKSFNRSARDAWELFQSTGVETLVAYDCSGAVLLMGTIFGGLITGTCSGVWAWIKWNDRAFMIGSTSMLMGMILVGVAMVVVESAVTSIYICYAEDPLLIQRWDTEFFNQMSETLHQRLQHRSSRGAREVLTHDQLDSHASI* >Glyma01g21360.2 sequence type=predicted peptide gene model=Glyma01g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQQRRWHDVFWLGIFVIHLVGMGLVLGVLGLNRFKQKNRLDIDKYTYRFMENEAGLTEDYWPLYAVAGGLGTALGWSWLLLLGSRATQMMKVSVHILTTYLAVISVLCFWAEQFFWGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWNIPEVMRVAYAFMLVVLLWMALWSFGAAGVVASSMGDGGRWWLLVVLSISLFWTGAVLCNTVHVIVSGTVVLVSIHGGREAVSIPANSFMKCLQYALTTSFGSICYGSLFTAAIRTLRWEIRGIRSRIGNNECLLCCVDFVFHLVETLVRFFNKYAYVQIAVYGKSFNRSARDAWELFQSTGVETLVAYDCSGAVLLMGTIFGGLITGTCSGVWAWIKWNDRAFMIGSTSMLMGMILVGVAMVVVESAVTSIYICYAEDPLLIQRWDTEFFNQMSETLHQRLQHRSSRGAREVLTHDQLDSHASI* >Glyma01g21360.3 sequence type=predicted peptide gene model=Glyma01g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQQRRWHDVFWLGIFVIHLVGMGLVLGVLGLNRFKQKNRLDIDKYTYRFMENEAGLTEDYWPLYAVAGGLGTALGWSWLLLLGSRATQMMKVSVHILTTYLAVISVLCFWAEQFFWGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWNIPEVMRVAYAFMLVVLLWMALWSFGAAGVVASSMGDGGRWWLLVVLSISLFWTGAVLCNTVHVIVSGTVVLVSIHGGREAVSIPANSFMKCLQYALTTSFGSICYGSLFTAAIRTLRWEIAVYGKSFNRSARDAWELFQSTGVETLVAYDCSGAVLLMGTIFGGLITGTCSGVWAWIKWNDRAFMIGSTSMLMGMILVGVAMVVVESAVTSIYICYAEDPLLIQRWDTEFFNQMSETLHQRLQHRSSRGAREVLTHDQLDSHASI*
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