Glyma01g20950 - SoyBase

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Report for Sequence Feature Glyma01g20950

Feature Type:	gene_model
Chromosome:	Gm01
Start:	26043471
stop:	26048530
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g20950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25480	AT	Annotation by Michelle Graham. TAIR10: Aluminium activated malate transporter family protein \| chr1:8948467-8950876 FORWARD LENGTH=548	SoyBase	E_val: 0	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4711	KOG	Predicted membrane protein	JGI		ISS
PF11744	PFAM	Aluminium activated malate transporter	JGI		ISS
UniRef100_Q9C6L8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter 4 n=1 Tax=Arabidopsis thaliana RepID=ALMT4_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337A1A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337A1A related cluster n=1 Tax=unknown RepID=UPI0002337A1A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g20950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g20950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g083700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g20950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g20950

Limit To All Plant Sequences

>Glyma01g20950.1   sequence type=CDS   gene model=Glyma01g20950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCAGCGAGAAGCGTGTCGTTGAGGCAAATATTCGCGGAGAGGAGCAAGGAGAGGCTCCTCTCGCGGAAGGACTTTTCTGACCTGAGGCTAAACGGCACCACCGCCACCTCCGCCTCTGTCGCTACTCCCCACGCCCTCTCCGATCGTGTGGCGCAGTTCGGCGAGGGCGTGGGGAGGTTCTTCCGCGAGCTGCGGGAGATGGCGCGGTCGGATCCGCGGAAGGTGGTGTTTGCGGCGAAGGCGGGGCTGTCGCTGGCGCTGGTGTCGCTGTTCATTTACATCAAGGAGGAGCAGCTCAGCAAGTACTCCATCTGGGCCATTCTCACCGTCGTTGTCGTCTTCGAATTCAGCGTAGGTGCAACTTTGAACAAAGGGTTCAATCGTTCTTTGGGCACAATTTCCGCTGGAGGGCTTGCGCTGGGAATTGCTGAGTTGGCCGTTTTGTCTGGAAAGTTCGAGGAACTTATCATTGTACTATGCATATTTATCGCAGGATTTTGTGCAAGCTATGTGAAGCTACTGCCTGCAATGAAGACATATGAATATGGTTTTCGTGTGTTTTTGTTGACATTTTGTATTGTATTGGTATCTGGAAGAACTAGCAGGGAATTTTTCTCCACAGCCTTTTATAGATTAATTCTTATTGCAATTGGTGCTGGCATATGTTTGTTTGTAAATATTTTCATATACCCCATCTGGTCTGGGGAGGATCTGCATAAATTGGTGGTGAAAAATTTCAATGGAGTTGCTGCATCTTTAGAAGGCTGTGTTAATGGTTACCTGCAATGTGTTGCATATGAGAGGGTCCCTTCAAAAATTCTTGTTTATCAAGCCTCAGATGATCCACTTTACCGTGGCTATAGAGCAGCAGTTCAATCATCAAGTCAAGAAGAGTCTTTGGTAGATTTTGCATTATGGGAGCCACCTCATGGTCCATACAAGACATTCAATTATCCTTGGAGAAGCTATGTTAAAGTCAGCGGAGCTTTGAGGCATTGTGCTTTCATGGTCATGGCAATGCATGGATGCATTCTTTCGGAAATACAGGCACCCCCAGAAAAGAGGCTGGTTTTCAGTAATGAACTTCAGAAGGTTGGTACTGAAGGAGCTAAAGTATTGCGTCAACTTGGAAGCAAAGTGGAAAAGATGGAAAAGCTAAGCAACATAGACATACTCTTGAAAGTGCATGAAGCAGCTGAGCAATTGTCGATGAAGATTGACCAACAATCATTCCTCCTAGTAAATTCAGAGAGCTGGCAGGCTGCAAAAAAGCCTAAAGAAGTTGAAAATCATGACAATTTGTTTATTGATCTCAAAGACCATCATGAACACAAACACTCCCTGATCTCTTCCCTCAGTGAAACAGGAGTTGATTCAAGACTTAACATAAACATAGAGCCTTCAGTTCCTGAATTGCACATTTCTCAAAGCTTGTTGTCCAATAAAATATCATGGCCACGTCTCTCATTTTATGGAGATAACATGTTACTTGAGCAAGATTCCAAAGTATATGAAAGTGCAAGCTCTCTGTCTTTGGCAACATTTGCTTCCCTTTTGATAGAGTTTGTTGCAAGGCTTCAAAATCTTGTGGATGAATTCCAAGATCTCAGTGAGAAGGCCAATTTCAAAGACCCCTTTGACCAAACAGTGTTGAAGTAG

Predicted protein sequences of Glyma01g20950

Limit To All Plant Sequences

>Glyma01g20950.1   sequence type=predicted peptide   gene model=Glyma01g20950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAARSVSLRQIFAERSKERLLSRKDFSDLRLNGTTATSASVATPHALSDRVAQFGEGVGRFFRELREMARSDPRKVVFAAKAGLSLALVSLFIYIKEEQLSKYSIWAILTVVVVFEFSVGATLNKGFNRSLGTISAGGLALGIAELAVLSGKFEELIIVLCIFIAGFCASYVKLLPAMKTYEYGFRVFLLTFCIVLVSGRTSREFFSTAFYRLILIAIGAGICLFVNIFIYPIWSGEDLHKLVVKNFNGVAASLEGCVNGYLQCVAYERVPSKILVYQASDDPLYRGYRAAVQSSSQEESLVDFALWEPPHGPYKTFNYPWRSYVKVSGALRHCAFMVMAMHGCILSEIQAPPEKRLVFSNELQKVGTEGAKVLRQLGSKVEKMEKLSNIDILLKVHEAAEQLSMKIDQQSFLLVNSESWQAAKKPKEVENHDNLFIDLKDHHEHKHSLISSLSETGVDSRLNINIEPSVPELHISQSLLSNKISWPRLSFYGDNMLLEQDSKVYESASSLSLATFASLLIEFVARLQNLVDEFQDLSEKANFKDPFDQTVLK*

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