SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g20870): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g20870): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma01g20870

Feature Type:gene_model
Chromosome:Gm01
Start:25714753
stop:25716813
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g20870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13330AT Annotation by Michelle Graham. TAIR10: Arabidopsis Hop2 homolog | chr1:4568008-4569410 FORWARD LENGTH=226 SoyBaseE_val: 1.00E-117ISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006302GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0051026GO-bp Annotation by Michelle Graham. GO Biological Process: chiasma assembly SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4603 KOG TBP-1 interacting protein JGI ISS
PTHR15938Panther TBP-1 INTERACTING PROTEIN JGI ISS
PF07106PFAM Tat binding protein 1(TBP-1)-interacting protein (TBPIP) JGI ISS
UniRef100_G7JZE5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homologous-pairing protein-like protein n=1 Tax=Medicago truncatula RepID=G7JZE5_MEDTR SoyBaseE_val: 6.00E-129ISS
UniRef100_I1J6M0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6M0_SOYBN SoyBaseE_val: 5.00E-162ISS

Expression Patterns of Glyma01g20870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g20870 not represented in the dataset
Glyma01g20870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g20870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g083100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g20870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g20870
>Glyma01g20870.1   sequence type=CDS   gene model=Glyma01g20870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAAAATCCGATAGCGCCGAAGCGATCGTGTTGAACTTCGTCAACGAGCAAAATAGGCCGGTGAATGCGCAGAACGTGGCGGATGCATTGCAAAAGTTCAATCTTAAGAAAGCGGCGATTCAGAAAGCGTTGGACATACTCGCCGATGGAAAGCGGATTTCGTTCAAGGAGTTTGGGAAGCAGAAGATATACCTTGCGCGGCAAGACCAGTTTCAAATTCCCAACACTGAAGAGCTGAATCACATGAAGAAACAGAATGCTGACCTTCAAAAGCAGCTAGAGGATCAGAAAAAGGCTACTAGTGAGGTTGAAGCAGAAATTAAGTCATTGCAATCAAATTTGACACTGGAACAGATCTTTGAAAGAGAAGTAAATCTTAGATTGGAGGTTCAAGAAATGGAGGATAAATTGACCAAGTTACGTGGAGGTGTTACTCTGGTGAAGCCAGAGGAACGCAAGGCTGTTGAGAATATGTTGTCAGAGATGATAGGTCAGTGGAGAAAGCGGAAAAGAATGTTCAAGGATTTATGGGATACCCTCACTGAGAACTCACCTAAGGATCCCAAAGAATTTCAGGAGGAGCTTGGAATAGAATATGATGAAGAAGATGTTGGGGTGAGTTTGCAGTCATACAATGACCTGATTCAACAGGGTCAGAAGAGGCCTAGGGGGCAGTGA
Predicted protein sequences of Glyma01g20870
>Glyma01g20870.1   sequence type=predicted peptide   gene model=Glyma01g20870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKSDSAEAIVLNFVNEQNRPVNAQNVADALQKFNLKKAAIQKALDILADGKRISFKEFGKQKIYLARQDQFQIPNTEELNHMKKQNADLQKQLEDQKKATSEVEAEIKSLQSNLTLEQIFEREVNLRLEVQEMEDKLTKLRGGVTLVKPEERKAVENMLSEMIGQWRKRKRMFKDLWDTLTENSPKDPKEFQEELGIEYDEEDVGVSLQSYNDLIQQGQKRPRGQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo