SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68580 | AT | Annotation by Michelle Graham. TAIR10: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | chr1:25752869-25755631 FORWARD LENGTH=648 | SoyBase | E_val: 2.00E-158 | ISS |
| GO:0006333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PF01426 | PFAM | BAH domain | JGI | ISS | |
| PF05641 | PFAM | Agenet domain | JGI | ISS | |
| UniRef100_G7JZF1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Agenet and bromo-adjacent homology (BAH) domain-containing protein-like protein n=2 Tax=Medicago truncatula RepID=G7JZF1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DDE4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DDE4 related cluster n=1 Tax=unknown RepID=UPI000233DDE4 | SoyBase | E_val: 0 | ISS |
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Glyma01g20775 not represented in the dataset |
Glyma01g20775 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g082400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g20775.1 sequence type=CDS gene model=Glyma01g20775 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACGACGTCGTGTGAGTACGTGAGCTGGGAGGAGGTGTTTATGTCGAACGACCAGGGGAGGAGGGAGGTTCATTACTTGCTTAAACGACGAGGCGGTGGCTCGGATCTGGCCGTTTTGGGAAAAGAGAAGAGCCTCAAACACATGTCGTATCGCTACGCCATTCGAAACACGTCGTCGTTTCGGCCTTACTTTAAGCTCAGGTCGCGCAGAGAGGTTGTTAATTGGTTGGATTCAATTGTTTCAGATTCGTCTTCTGGGGATGCGGCTATGGTGGGAAAACATGGTTATGAACCTGAAATTGGAGCCTTGAAGGATAATCAATTGCAGAGGATGCGCAATTGTACAAAAGAATTCTCATGGATAGGGTTGCCATGGGCGTGTAAGAAAAGAAGAAAGCACTATCAGGCATATAAGAGAAATGGTTTTCAGATATCCGTGCATGATTTTATATTTGTTCTGGCAGAAGAGGACAAGCGTCTAGTTGCCTACTTGGAAGACCTTTATGAGGATTCCAAAGGCAATAAGATGGTTGTGGTGCGCTGGTTTCACAAAATTGATGAGGTTGGTATTGCTTTGCCTCACAGTTTTAGTGACAGAGAGGTTTTCTTTTCTCTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGATTGGCTTTCGTCCTCAGTCCTGGGCATTACGAAAAGTTTCAGAATGAGGCCCGTTGTACTCACTTAGAGCCATTCATCTGCAACCACCAGTTCGATAATGATGATGTGAAACCCTTTGATATAACACAGATTAAGGGTTATTGGAAACAGGAAATTCTCAGGTACATGTATACCCAATTGGACTCGAAGTCTAGTGGGAGTTCCAGGCAATCAGATGATGACCTGGAACTTGATGAAAATCATATGACTACCGTTTTTATCAGACCTAAGAAGAGGCTGCGCCTTACCAAAGCAGATGATGCCAAAGAAGCAGTTGATTTGGTTGGCCTTAAAACAGAAAATGTGAATAACAGTAAGAATAATACCAAAATCAATACTGGAAACAATTCTGGGAAACTGATTGGGCACACAAACATGACAGCAACCATTAAAGGGACAAATGAACATGCTTCACACCATTTAGTTGTAGGTTCCCTAGTCGAGGTCCTCTCTCAAGACGGTGGGATGAGAGGATGCTGGTTCAGAGCTTCTGTCATTAAGAAGAATAAAGATAAAGTCAAGGTGCAATATCAAGATATTCAGGATGCTGTCGATGAAACCAAGAAGCTTGAGGAATGGGTTTTAGCTTCCAGAATTGCAGTGCCTGACAACCTGGGTCTTCGAATGCGTGGGAGGACCATGGTCCGGCCAGCTCCACCATCCAACAAACGAGAACTATCGTGGGTCGGCGATGTTGGTTTTGTTGTTGATGCTTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAGGACTCGGAATCTAATTGTCATGTTTATTTCCCAGGGGAAAAAGTGGTGTCGGTATTTGGTCCTGGTAACTTGAGAGAGTCTCAAGATTGGGTGGGGAATGAGTGGGTATTTGTGAGGGAAAGACCTGATCTTGTGGCTTCTGTTTTATCTAGCTTGAAAACAAAACAAAACTCATGCAAATCCAATTCCAATAACATCCAATCAACTGGAGCAATCACCAGAGATGGAATACAATTTGGGCAATCGGATACTTGCTTGGATTCTGATAAGGATAGACCAAGAAAAGCTGAAGTGGTTCCAGACCTTTTGAAGAATGTTTTGTCATCCCAGTTAAGGTGGAAGACCACCAGAAAGAGGAAACGTGGAAGAAGCAGCGCCTCATATCAGAAGCCACGGTGCACTGACACCCATCAGAAAAGGTCACCGAATGTTATGAAATCAAATGCTCCTGACAGTTTTTTGATCCCGGCATCATTGAAAGTTGATCATGATGACTGCAAGTATGTTGGGGATCCTTCCATCTTCAGTTCTTCAGTTGTGCCTTCTTTAACTAACATGGTTATGTGTAGGTGA
>Glyma01g20775.1 sequence type=predicted peptide gene model=Glyma01g20775 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTTSCEYVSWEEVFMSNDQGRREVHYLLKRRGGGSDLAVLGKEKSLKHMSYRYAIRNTSSFRPYFKLRSRREVVNWLDSIVSDSSSGDAAMVGKHGYEPEIGALKDNQLQRMRNCTKEFSWIGLPWACKKRRKHYQAYKRNGFQISVHDFIFVLAEEDKRLVAYLEDLYEDSKGNKMVVVRWFHKIDEVGIALPHSFSDREVFFSLYLQDLSIECIDGLAFVLSPGHYEKFQNEARCTHLEPFICNHQFDNDDVKPFDITQIKGYWKQEILRYMYTQLDSKSSGSSRQSDDDLELDENHMTTVFIRPKKRLRLTKADDAKEAVDLVGLKTENVNNSKNNTKINTGNNSGKLIGHTNMTATIKGTNEHASHHLVVGSLVEVLSQDGGMRGCWFRASVIKKNKDKVKVQYQDIQDAVDETKKLEEWVLASRIAVPDNLGLRMRGRTMVRPAPPSNKRELSWVGDVGFVVDAWWHDGWWEGIVVQKDSESNCHVYFPGEKVVSVFGPGNLRESQDWVGNEWVFVRERPDLVASVLSSLKTKQNSCKSNSNNIQSTGAITRDGIQFGQSDTCLDSDKDRPRKAEVVPDLLKNVLSSQLRWKTTRKRKRGRSSASYQKPRCTDTHQKRSPNVMKSNAPDSFLIPASLKVDHDDCKYVGDPSIFSSSVVPSLTNMVMCR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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