Glyma01g20760 - SoyBase

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Report for Sequence Feature Glyma01g20760

Feature Type:	gene_model
Chromosome:	Gm01
Start:	25500531
stop:	25509163
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g20760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06350	AT	Annotation by Michelle Graham. TAIR10: dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative \| chr3:1924536-1927701 REVERSE LENGTH=603	SoyBase	E_val: 0	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0019632	GO-bp	Annotation by Michelle Graham. GO Biological Process: shikimate metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003855	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-dehydroquinate dehydratase activity	SoyBase	N/A	ISS
GO:0004764	GO-mf	Annotation by Michelle Graham. GO Molecular Function: shikimate 3-dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
KOG0692	KOG	Pentafunctional AROM protein	JGI		ISS
PTHR21089	Panther	SHIKIMATE DEHYDROGENASE	JGI		ISS
PF01487	PFAM	Type I 3-dehydroquinase	JGI		ISS
PF01488	PFAM	Shikimate / quinate 5-dehydrogenase	JGI		ISS
PF08501	PFAM	Shikimate dehydrogenase substrate binding domain	JGI		ISS
UniRef100_G7JQT3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dehydroquinate dehydratase/ shikimate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JQT3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J6L0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6L0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g20760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g20760 not represented in the dataset	Glyma01g20760 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g20760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g082200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g20760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g20760

Limit To All Plant Sequences

>Glyma01g20760.2   sequence type=transcript   gene model=Glyma01g20760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGAAGAGAAAGGGTGGTGGTTAATGGTTATAGCTGCGGCGCTCAACTTGCAGCGGTCACTGCGTTGGTGCTCGTAAGGGCAGCGGAAGAGATGCAGCCAGCGAGGGTGGTCTTCTGTGATCTTGATATTCTCTGGTTATTGAAAAGGAAAAAAAGAATAAAAAGAAAAAGAAAAAAATCCTGGTCATTGACTTAAAAGGTCATACATCTAACGGTGTTGAATAACTTTCCCATGGTGGGAGACCTAATCCACTCTCCCACAATAGCCTGCGCCCACCAACCAACATACTTCAACAACTACTCTCTCTCTCTCTCCTTCTCAGCATCAAACACACCCCTTCCCAAAACTCATTTCTCATCTCAATCAATCCAATGGACTCTCCCAACGCTTTGTCTACCGCTCCGGCAGCGGGTAGTAGGAAGAACGCGACGCTAATTTGCGTCCCAATAATGGGAGAATCAGTTGAAAAGATGGAGATTGACGTGGACAAAGCGAAAGCCGGAGGCGCGGACCTTGTTGAAATTCGATTGGATTCTTTGAAAACCTTTGACCCCTATCGAGATCTCAACGCTTTCATTCAACACCGTTCTTTACCCTTGTTGTTCACTTACAGGCCCAAATGGGAGGGTGGTATGTATGATGGTGATGAAAATAAACGGCTGGATGCACTTCGGTTAGCCATGGAGTTGGGAGCTGATTACATTGACATTGAACTTCAGGTAGCACATGAGTTCTATGACTCTATACGTGGGAAGACATTCAATAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCTTACTCCTTCAATTGAGGATCTTGGTAACCTTGTAGCAAGAATACAAGCAACGGGAGCAGACATTGTGAAGATTGCAACAACTGCCTTGGACATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTTCCATTTATTGGACTTGTTATGGGTGATAGGGGGTTGATTTCTCGTATACTTTCTGCAAAATTTGGTGGATATCTCACTTTTGGTACCCTTGAGTCAGGAGTTGTTTCAGCTCCTGGTCAACCTACTCTTAAGGATCTATTGTATCTATACAATTTAAGACAACTGGCTCCTGATACAAAAGTATTTGGGATTATTGGAAAGCCTGTCGGTCACAGTAAATCACCCATATTATTCAATGAAGTCTTCAAGTCAATTGGTTTGAATGGTGTTTATCTATTTTTATTGGTGGATGACCTTGCCAATTTTCTCAGGACTTACTCTTCTACAGATTTTGTGGGATTCAGTGTTACCATTCCTCACAAGGAGACAGCACTTAAGTGTTGTGATGAGGTTGATCCAGTGGCTAAGTCAATAGGAGCTGTGAATTGCATTGTAAGAAGACCAACTGACGGGAAATTGATTGGGTATAACACTGATTATGTTGGTGCTATTACTGCAATTGAGAATGGGTTACGAGGTAAACATAATGGTAGTAGCACAACTATTTCTCCATTAGCTGGTAAGCTGTTTGTTGTTATTGGGGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGTGCAAAAGCAAAAGGAGCTAGGGTTGTGATTGCAAACCGTACCTATGACCATGCCAGAAAACTTGCTTATGCAATTGGAGGAGATGCTTTAGCCCTTGCTGATTTAGATAATTACCATCCGGAGGATGGTATGATTCTTGCAAACACAACATCAATTGGAATGCAACCTAAAGTTGATGAGACGCCTGTTTCTAAGCACGCTTTGAAATATTACTCCCTAGTTTTTGATGCTGTCTACACGCCCAAGATTACTAGACTCTTGAAAGAAGCAGAAGAATCAGGAGCCACTATTGTAACAGGATTGGAGATGTTTATGGGGCAAGCATATGGACAATATGAGAATTTCACCGGATTACCAGCACCAAAGGAGCTCTTCAGAAAAATTATGGAAAACTATTGAAGAGTGATCGGTTATCTTTGCAACACAATCAAAGAATCTAATGGCGAGGTACTTTAAAGTGTTTAGGATGTGAATGAGGAGGTATCCTCCCCGTTCTACTTCCAATTTTTCAAAGTCTTGTTAATTGAAATCAACAAATGATTTTGTATCTCAATTAGAGTGTATTTGGATAGAGAATTTTAACTGAGGAGACTAATTTATCAGAGAATTTAAATTTTTTTTAATTTAAAATTTATTATTTGGATGTTTTTTATGAA

Coding sequences of Glyma01g20760

Limit To All Plant Sequences

>Glyma01g20760.1   sequence type=CDS   gene model=Glyma01g20760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCTCCCAACGCTTTGTCTACCGCTCCGGCAGCGGGTAGTAGGAAGAACGCGACGCTAATTTGCGTCCCAATAATGGGAGAATCAGTTGAAAAGATGGAGATTGACGTGGACAAAGCGAAAGCCGGAGGCGCGGACCTTGTTGAAATTCGATTGGATTCTTTGAAAACCTTTGACCCCTATCGAGATCTCAACGCTTTCATTCAACACCGTTCTTTACCCTTGTTGTTCACTTACAGGCCCAAATGGGAGGGTGGTATGTATGATGGTGATGAAAATAAACGGCTGGATGCACTTCGGTTAGCCATGGAGTTGGGAGCTGATTACATTGACATTGAACTTCAGGTAGCACATGAGTTCTATGACTCTATACGTGGGAAGACATTCAATAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCTTACTCCTTCAATTGAGGATCTTGGTAACCTTGTAGCAAGAATACAAGCAACGGGAGCAGACATTGTGAAGATTGCAACAACTGCCTTGGACATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTTCCATTTATTGGACTTGTTATGGGTGATAGGGGGTTGATTTCTCGTATACTTTCTGCAAAATTTGGTGGATATCTCACTTTTGGTACCCTTGAGTCAGGAGTTGTTTCAGCTCCTGGTCAACCTACTCTTAAGGATCTATTGTATCTATACAATTTAAGACAACTGGCTCCTGATACAAAAGTATTTGGGATTATTGGAAAGCCTGTCGGTCACAGTAAATCACCCATATTATTCAATGAAGTCTTCAAGTCAATTGGTTTGAATGGTGTTTATCTATTTTTATTGGTGGATGACCTTGCCAATTTTCTCAGGACTTACTCTTCTACAGATTTTGTGGGATTCAGTGTTACCATTCCTCACAAGGAGACAGCACTTAAGTGTTGTGATGAGGTTGATCCAGTGGCTAAGTCAATAGGAGCTGTGAATTGCATTGTAAGAAGACCAACTGACGGGAAATTGATTGGGTATAACACTGATTATGTTGGTGCTATTACTGCAATTGAGAATGGGTTACGAGGTAAACATAATGGTAGTAGCACAACTATTTCTCCATTAGCTGGTAAGCTGTTTGTTGTTATTGGGGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGTGCAAAAGCAAAAGGAGCTAGGGTTGTGATTGCAAACCGTACCTATGACCATGCCAGAAAACTTGCTTATGCAATTGGAGGAGATGCTTTAGCCCTTGCTGATTTAGATAATTACCATCCGGAGGATGGTATGATTCTTGCAAACACAACATCAATTGGAATGCAACCTAAAGTTGATGAGACGCCTGTTTCTAAGCACGCTTTGAAATATTACTCCCTAGTTTTTGATGCTGTCTACACGCCCAAGATTACTAGACTCTTGAAAGAAGCAGAAGAATCAGGAGCCACTATTGTAACAGGATTGGAGATGTTTATGGGGCAAGCATATGGACAATATGAGAATTTCACCGGATTACCAGCACCAAAGGAGCTCTTCAGAAAAATTATGGAAAACTATTGA

>Glyma01g20760.2   sequence type=CDS   gene model=Glyma01g20760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCTCCCAACGCTTTGTCTACCGCTCCGGCAGCGGGTAGTAGGAAGAACGCGACGCTAATTTGCGTCCCAATAATGGGAGAATCAGTTGAAAAGATGGAGATTGACGTGGACAAAGCGAAAGCCGGAGGCGCGGACCTTGTTGAAATTCGATTGGATTCTTTGAAAACCTTTGACCCCTATCGAGATCTCAACGCTTTCATTCAACACCGTTCTTTACCCTTGTTGTTCACTTACAGGCCCAAATGGGAGGGTGGTATGTATGATGGTGATGAAAATAAACGGCTGGATGCACTTCGGTTAGCCATGGAGTTGGGAGCTGATTACATTGACATTGAACTTCAGGTAGCACATGAGTTCTATGACTCTATACGTGGGAAGACATTCAATAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCTTACTCCTTCAATTGAGGATCTTGGTAACCTTGTAGCAAGAATACAAGCAACGGGAGCAGACATTGTGAAGATTGCAACAACTGCCTTGGACATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTTCCATTTATTGGACTTGTTATGGGTGATAGGGGGTTGATTTCTCGTATACTTTCTGCAAAATTTGGTGGATATCTCACTTTTGGTACCCTTGAGTCAGGAGTTGTTTCAGCTCCTGGTCAACCTACTCTTAAGGATCTATTGTATCTATACAATTTAAGACAACTGGCTCCTGATACAAAAGTATTTGGGATTATTGGAAAGCCTGTCGGTCACAGTAAATCACCCATATTATTCAATGAAGTCTTCAAGTCAATTGGTTTGAATGGTGTTTATCTATTTTTATTGGTGGATGACCTTGCCAATTTTCTCAGGACTTACTCTTCTACAGATTTTGTGGGATTCAGTGTTACCATTCCTCACAAGGAGACAGCACTTAAGTGTTGTGATGAGGTTGATCCAGTGGCTAAGTCAATAGGAGCTGTGAATTGCATTGTAAGAAGACCAACTGACGGGAAATTGATTGGGTATAACACTGATTATGTTGGTGCTATTACTGCAATTGAGAATGGGTTACGAGGTAAACATAATGGTAGTAGCACAACTATTTCTCCATTAGCTGGTAAGCTGTTTGTTGTTATTGGGGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGTGCAAAAGCAAAAGGAGCTAGGGTTGTGATTGCAAACCGTACCTATGACCATGCCAGAAAACTTGCTTATGCAATTGGAGGAGATGCTTTAGCCCTTGCTGATTTAGATAATTACCATCCGGAGGATGGTATGATTCTTGCAAACACAACATCAATTGGAATGCAACCTAAAGTTGATGAGACGCCTGTTTCTAAGCACGCTTTGAAATATTACTCCCTAGTTTTTGATGCTGTCTACACGCCCAAGATTACTAGACTCTTGAAAGAAGCAGAAGAATCAGGAGCCACTATTGTAACAGGATTGGAGATGTTTATGGGGCAAGCATATGGACAATATGAGAATTTCACCGGATTACCAGCACCAAAGGAGCTCTTCAGAAAAATTATGGAAAACTATTGA

Predicted protein sequences of Glyma01g20760

Limit To All Plant Sequences

>Glyma01g20760.1   sequence type=predicted peptide   gene model=Glyma01g20760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSPNALSTAPAAGSRKNATLICVPIMGESVEKMEIDVDKAKAGGADLVEIRLDSLKTFDPYRDLNAFIQHRSLPLLFTYRPKWEGGMYDGDENKRLDALRLAMELGADYIDIELQVAHEFYDSIRGKTFNKTKVIVSSHNYQLTPSIEDLGNLVARIQATGADIVKIATTALDITDVARMFQIMVHSQVPFIGLVMGDRGLISRILSAKFGGYLTFGTLESGVVSAPGQPTLKDLLYLYNLRQLAPDTKVFGIIGKPVGHSKSPILFNEVFKSIGLNGVYLFLLVDDLANFLRTYSSTDFVGFSVTIPHKETALKCCDEVDPVAKSIGAVNCIVRRPTDGKLIGYNTDYVGAITAIENGLRGKHNGSSTTISPLAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDHARKLAYAIGGDALALADLDNYHPEDGMILANTTSIGMQPKVDETPVSKHALKYYSLVFDAVYTPKITRLLKEAEESGATIVTGLEMFMGQAYGQYENFTGLPAPKELFRKIMENY*

>Glyma01g20760.2   sequence type=predicted peptide   gene model=Glyma01g20760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSPNALSTAPAAGSRKNATLICVPIMGESVEKMEIDVDKAKAGGADLVEIRLDSLKTFDPYRDLNAFIQHRSLPLLFTYRPKWEGGMYDGDENKRLDALRLAMELGADYIDIELQVAHEFYDSIRGKTFNKTKVIVSSHNYQLTPSIEDLGNLVARIQATGADIVKIATTALDITDVARMFQIMVHSQVPFIGLVMGDRGLISRILSAKFGGYLTFGTLESGVVSAPGQPTLKDLLYLYNLRQLAPDTKVFGIIGKPVGHSKSPILFNEVFKSIGLNGVYLFLLVDDLANFLRTYSSTDFVGFSVTIPHKETALKCCDEVDPVAKSIGAVNCIVRRPTDGKLIGYNTDYVGAITAIENGLRGKHNGSSTTISPLAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDHARKLAYAIGGDALALADLDNYHPEDGMILANTTSIGMQPKVDETPVSKHALKYYSLVFDAVYTPKITRLLKEAEESGATIVTGLEMFMGQAYGQYENFTGLPAPKELFRKIMENY*

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