SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25860 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoacid dehydrogenases acyltransferase family protein | chr3:9460632-9462585 FORWARD LENGTH=480 | SoyBase | E_val: 0 | ISS |
| GO:0000096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0006086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA biosynthetic process from pyruvate | SoyBase | N/A | ISS |
| GO:0006546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycine catabolic process | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process | SoyBase | N/A | ISS |
| GO:0006766 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process | SoyBase | N/A | ISS |
| GO:0009106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process | SoyBase | N/A | ISS |
| GO:0009108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process | SoyBase | N/A | ISS |
| GO:0009117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019748 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary metabolic process | SoyBase | N/A | ISS |
| GO:0044272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0004742 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dihydrolipoyllysine-residue acetyltransferase activity | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| KOG0557 | KOG | Dihydrolipoamide acetyltransferase | JGI | ISS | |
| PTHR23151 | Panther | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | JGI | ISS | |
| PTHR23151:SF31 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00198 | PFAM | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | JGI | ISS | |
| PF00364 | PFAM | Biotin-requiring enzyme | JGI | ISS | |
| PF02817 | PFAM | e3 binding domain | JGI | ISS | |
| UniRef100_I1J6K8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J6K8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SQI8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-oxoacid dehydrogenases acyltransferase family protein n=3 Tax=Arabidopsis thaliana RepID=Q9SQI8_ARATH | SoyBase | E_val: 0 | ISS |
|
Glyma01g20720 not represented in the dataset |
Glyma01g20720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g081900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g20720.1 sequence type=CDS gene model=Glyma01g20720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCGCCCTTTCTCCCCGCCAAAACCAATTCCGCCACCCTCTCCTTCTCCGCCGCAGTCCCCGGCCGCCGCCTCCACTTCGCGGCGTCTCCGTCGCATTCCCCTCGACGGAGGTCCTCCCTGACGGTGAAGTCGAAGATCAGGGAGATCTTCATGCCCGCCCTCAGCTCCACCATGACGGAGGGAAAAATCGTCTCGTGGGTCAAGTCCGAGGGCGACGTCCTCTCCAAAGGTGACAGCGTCGTCGTCGTCGAGTCCGACAAGGCCGACATGGACGTCGAGACGTTCTACAATGGCATCCTCGCCGTCATCGTTGTCGCCGAGGGCCAGACCGCCCCCGTCGGTGCCCCCATCGGCCTCCTTGCGGAGACCGAGGCCGAAGTTGCCGAGGCCATGGCAGCCGCCAATTCTGCTCCAACTCCACCTCCCAAAGCTTCCGATACTTCTCCGGCGCCGGCACCGGCGCCGGAAGTCTCTGATTCACCACGTAAGGCGGTTGCAACACCGTATGCCAAGAAGCTCGCGAAGCAGCACAAAGTGAACATAGGTTCGGTTGTCGGGACTGGTCCGTTTGGAAGAGTCACTCCTGCTGACGTGGAGAAGGCCGCCGGTATTTTGCCGGCGGAGAGCAATGTAGCTCCGGCGGCGGTGGATTCGGCTCCACCGAAAGCTGCTGCTGCGGCTCCGGCGGCATCCTCGGCTTCAATTCCAGGTTCTAGTGTTGTGGCCTTTACGACAATGCAATCTGCGGTTGCGAAGAACATGGTGGAGAGTCTCTCTGTGCCGACGTTCCGTGTTGGGTACCCAGTTACCACTGATGCACTTGATGCTCTGTATGAGAAGGTGAGAAAAAAGGGTGTGACCATGACAGCGATTCTGGCCAAGGCAGCTGCAATGGCACTCGTTCAGCACCCAGTGGTGAATGCCTCGTGCAAAGATGGGAAGAACTTTGCCTATAATAGTAACATTAACATTGCTGTTGCTGTGGCAACCAATGGTGGTTTGATTACACCGGTTCTTCAGGATGCAGATAAGTTGGACTTGTATCTTTTGTCCCAAAAATGGAAAGAACTAGTGGAAAAAGCTCGTGCCAAGCAATTGCAACCTCATGAATATAATTCAGGAACTTTCACACTTTCAAATTTGGGAATGTTTGGAGTTGACAGGTTTGACGCCATACTTCCTCCAGGCCAGGGGGCTATCATGGCGGTTGGAGCATCAAAACCTACTGTCCTAGCAGATAAGGATGGTTTCTTTACTGTAAAAAGTAAAATGCTGGTAAATGTAACTGCTGATCACCGAATAATCTATGGGGCTGACTTGGCTGCATTCCTTCAGACATTCTCAAAAATCATTGAGAACCCTGAATGCCTAACATTGTAG
>Glyma01g20720.1 sequence type=predicted peptide gene model=Glyma01g20720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPFLPAKTNSATLSFSAAVPGRRLHFAASPSHSPRRRSSLTVKSKIREIFMPALSSTMTEGKIVSWVKSEGDVLSKGDSVVVVESDKADMDVETFYNGILAVIVVAEGQTAPVGAPIGLLAETEAEVAEAMAAANSAPTPPPKASDTSPAPAPAPEVSDSPRKAVATPYAKKLAKQHKVNIGSVVGTGPFGRVTPADVEKAAGILPAESNVAPAAVDSAPPKAAAAAPAASSASIPGSSVVAFTTMQSAVAKNMVESLSVPTFRVGYPVTTDALDALYEKVRKKGVTMTAILAKAAAMALVQHPVVNASCKDGKNFAYNSNINIAVAVATNGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFTVKSKMLVNVTADHRIIYGADLAAFLQTFSKIIENPECLTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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