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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68560 | AT | Annotation by Michelle Graham. TAIR10: alpha-xylosidase 1 | chr1:25734435-25737897 REVERSE LENGTH=915 | SoyBase | E_val: 0 | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010411 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xyloglucan metabolic process | SoyBase | N/A | ISS |
| GO:0045493 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan catabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0009044 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xylan 1,4-beta-xylosidase activity | SoyBase | N/A | ISS |
| GO:0046556 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-N-arabinofuranosidase activity | SoyBase | N/A | ISS |
| GO:0080176 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xyloglucan 1,6-alpha-xylosidase activity | SoyBase | N/A | ISS |
| KOG1065 | KOG | Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 | JGI | ISS | |
| PTHR22762 | Panther | ALPHA-GLUCOSIDASE | JGI | ISS | |
| PTHR22762:SF9 | Panther | ALPHA-GLUCOSIDASE | JGI | ISS | |
| PF01055 | PFAM | Glycosyl hydrolases family 31 | JGI | ISS | |
| UniRef100_G7JXA7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-D-xylosidase n=1 Tax=Medicago truncatula RepID=G7JXA7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023370B3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023370B3 related cluster n=1 Tax=unknown RepID=UPI00023370B3 | SoyBase | E_val: 0 | ISS |
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Glyma01g20460 not represented in the dataset |
Glyma01g20460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g081300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g20460.1 sequence type=CDS gene model=Glyma01g20460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCTTCCAACCGTTTTGCTGCTCTACCTCTCTGTTCTCTTCTCCTAGCTCTGCTTCTATGTGCAGTTGGGGCTAGCTCTTCTTCTTCTTCTTCCACAAATGCCACCAAAATTGGCCAAGGCTACCGTCTTGTCTCCATTGAAGAGACCCCTGACGGTGGTCTTATAGGGATCCTTCAAGTTAAGCAGAAAACCAAAACCTATGGCCCTGACATTCCCCTTCTTAGGTTCTATGTCAAGCATGAGACAGATAATCGTTTGAGGGTACACATAACCGATGCACAAAAGCAAAGGTGGGAGGTTCCCTATAACCTTTTGCCAAGGGAGCAACCACCACCTTTGAGTCAAAGCATTGGGAAGTCCAGGAAGAACCCTATTACAGTCTCTCAGTATTCTGGTTCTGAGTTTCTGTTCAGCTACACCTCAGACCCTTTTAGCTTTGCAGTGAAAAGGAAGTCCAATGGTGAGACCCTTTTTGACTCCTCCTCTGGTGATTCTGACCCTTTTAGTTCCCTTGTTTTTAAGGACCAGTACCTTGAGATTTCCACCAAATTGCCCAAAGATGCCTCTTTGTATGGTTTGGGAGAGAACACACAGCCACATGGGATCAAGTTGTACCCTAGTGACCCTTACACTTTGTACACCACTGACATTTCAGCCATTAATCTCAATGCTGATCTGTATGGATCACACCCTGTGTACATGGATCTCAGAAATGCAGGTGGCAAGGCTTCTGCACATGCTGTTCTGTTGCTCAATAGCAATGGAATGGATGTCTTCTACACTGGAACTTCTCTTACATACAAGATTATTGGGGGTGTTTTCGACTTTTATTTCTTTTCTGGGCCTAGTCCTCTGAATGTTGTTGATCAGTATACTACCTTAATTGGCAGACCAGCTCCAATGCCTTACTGGGCTTTTGGATTCCACCAGTGCAGATGGGGATATCACAATCTATCAGTGGTAGAAGATGTTGTGGAGAATTACAAGAAGGCTCAAATCCCACTTGATGTGATCTGGAATGATGATGATCACATGGATGGGAAAAAAGACTTCACACTCAACCCTGTCAACTACCCTCGTCCAAAACTTCTAAACTTCCTGGACAAGATACACAACATTGGCATGAAATATATTGTCATTATTGACCCTGGAATTGCTGTTAACACCAGTTATGGTGTATATCAAAGGGGTGTAGCTAATGATGTTTTTATCAAGTATGATGGTGAACCCTTCTTGGCTCAAGTTTGGCCTGGGGCAGTGAACTTTCCTGATTTTCTCAATCCAAAGACGGTTTCATGGTGGGTTGATGAGATTCACCGCTTCCATGAACTTGTTCCTGTTGATGGCCTGTGGATTGACATGAATGAAGTTTCAAATTTCTGTTCTGGAAAGTGCAAAATTCCCAAGGGAAAGTGCCCGACTGGAACAGGACCCGGATGGATATGCTGCTTGGATTGCAAGAACATCACCAAAACACGGTGGGACGATCCTCCATACAAAATTAACGCCTCAGGAATAAAAGCTCCTATTGGCTTCAAAACAATAGCCACTAGTGCGTACCACTATAATGGCGTTTTGGAGTATGATGCTCACAGTCTTTATGGCTTCTCTCAAACCATTGCAACTCACAAGGGCCTTCAAGGGCTTCAAGGCAAAAGGCCCTTTATTTTGTCCCGCTCCACTTATGTCGGATCAGGCAAATATGCTGCACATTGGACTGGTGACAATCAGGGAACATGGGAGAACTTGAGGTACTCAATATCCACAATGCTCAATTTTGGCATATTTGGGGTGCCAATGGTGGGTTCAGATATATGTGGCTTCTATCCACAGCCCACTGAAGAATTATGCAATAGATGGATTGAAGTAGGTGCTTTCTACCCGTTTTCAAGGGATCATGCAAACTACTACTCCCCTAGACAGGAGCTTTACCAATGGCAATCAGTAGCTGAGTCTGCTAGAAATGCTTTGGGCATAAGGTATAAGCTACTCCCATTCCTTTACACCTTGAACTATGAAGCTCATGTCAGTGGAGCCCCAATTGCTAGACCTCTTTTCTTCTCATTTCCAACTTACACCGAATGCTACGGCCTAAGCACCCAGTTCTTGCTAGGAAGCAGTCTCATGGTTTCTCCAGTGCTTGAGCAGGGAAAAACACAAGTGAAAGCACTCTTTCCACCTGGTAGCTGGTACAGTTTGCTTGATTGGACACACACCATTACATCAAAGGACGGAGTCTATATTACCCTCGACGCTCCTCTTCATGTTGTCAATGTGCATTTGTATCAGAACACCATTCTTCCTATGCAGCAGGGCGGAATGGTCTCTAAGGAAGCTAGAGCGACACCCTTCACCCTCATCGTAACCTTCCCATCGGACGCCACCCAAGGAGAGGCTAAGGGGAACCTTTTCCTCGACAACGATGAGTTGCCTGACATGAACCTTGGAAATGGCTATTCAACCTATGTTGATCTCCATGCAACTGTGGACCAAGGAGCTGTGAAAGTTTGGTCAGAAGTCCAAGAGGGCAAGTTTGCCTTGGACAAGGGTTGGATTATTGATTCTATATCTGTGCTGGGATTAGAAGGAAGTGGAGCAGTGTCTTCACTTGAGATAGATGGAAAGCCTCTAATGGGTGGCTCGAATGTGAATGTTACTACATCAGCACATGAGCACTTGAACAGTGAGGGAGAAGGAGAAAAGAAGACTGTGATGGTTGCTTTGAGGGGCTTGAGCATCCCTGTGGGTAAAAACTTTGCCATGACATGGAAAATGGGGTGA
>Glyma01g20460.1 sequence type=predicted peptide gene model=Glyma01g20460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSSNRFAALPLCSLLLALLLCAVGASSSSSSSTNATKIGQGYRLVSIEETPDGGLIGILQVKQKTKTYGPDIPLLRFYVKHETDNRLRVHITDAQKQRWEVPYNLLPREQPPPLSQSIGKSRKNPITVSQYSGSEFLFSYTSDPFSFAVKRKSNGETLFDSSSGDSDPFSSLVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPSDPYTLYTTDISAINLNADLYGSHPVYMDLRNAGGKASAHAVLLLNSNGMDVFYTGTSLTYKIIGGVFDFYFFSGPSPLNVVDQYTTLIGRPAPMPYWAFGFHQCRWGYHNLSVVEDVVENYKKAQIPLDVIWNDDDHMDGKKDFTLNPVNYPRPKLLNFLDKIHNIGMKYIVIIDPGIAVNTSYGVYQRGVANDVFIKYDGEPFLAQVWPGAVNFPDFLNPKTVSWWVDEIHRFHELVPVDGLWIDMNEVSNFCSGKCKIPKGKCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGIKAPIGFKTIATSAYHYNGVLEYDAHSLYGFSQTIATHKGLQGLQGKRPFILSRSTYVGSGKYAAHWTGDNQGTWENLRYSISTMLNFGIFGVPMVGSDICGFYPQPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWQSVAESARNALGIRYKLLPFLYTLNYEAHVSGAPIARPLFFSFPTYTECYGLSTQFLLGSSLMVSPVLEQGKTQVKALFPPGSWYSLLDWTHTITSKDGVYITLDAPLHVVNVHLYQNTILPMQQGGMVSKEARATPFTLIVTFPSDATQGEAKGNLFLDNDELPDMNLGNGYSTYVDLHATVDQGAVKVWSEVQEGKFALDKGWIIDSISVLGLEGSGAVSSLEIDGKPLMGGSNVNVTTSAHEHLNSEGEGEKKTVMVALRGLSIPVGKNFAMTWKMG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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