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Report for Sequence Feature Glyma01g20230

Feature Type:gene_model
Chromosome:Gm01
Start:24590328
stop:24594299
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g20230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13380AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1218) | chr1:4589218-4590362 REVERSE LENGTH=188 SoyBaseE_val: 3.00E-90ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06749PFAM Protein of unknown function (DUF1218) JGI ISS
UniRef100_G7JX88UniRef Annotation by Michelle Graham. Most informative UniRef hit: COSII n=1 Tax=Medicago truncatula RepID=G7JX88_MEDTR SoyBaseE_val: 1.00E-122ISS
UniRef100_I1J6K1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6K1_SOYBN SoyBaseE_val: 6.00E-136ISS

Expression Patterns of Glyma01g20230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g20230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g080900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g20230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g20230
>Glyma01g20230.1   sequence type=CDS   gene model=Glyma01g20230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACGGAAGAGGGTCCACTCTCGTGCATCTCTTGGTCGTGGTTCTGTGCTTGGTCGCATTTGGGTTTGCCGTTGCCGCCGAGAGAAGAAGAAGCGTCGGAACCATGCAAAAAATAGAAGGAACAAATGAAACATTTTGTAGCTACAGTTCTGATGTTGCGACTGGTTATGGAGTGGGTGCTTTCCTGTTTCTTCTTTCAGGTGAATCACTGCTAATGGGAGTGACAAAGTGCATGTGCTTTGGGAGGCCCTTAACACCTGGGGGAAATCGAGCATGGTCCATTATATACTTTCTTTCTTCCTGGGTCACTTTTCTGGTAGCAGAATCATGCTTGATAGCAGGTGCAACCAAGAATGCCTATCACACCAAATACCGTGGAATGATTTATGCTCAGAACTTCTCATGTGAAGCCTTGCGGAAAGGTGTCTTCGTTGCTGGAGCAGTTTTCGTTGTTGTAACCATGATTCTTAACGTATACTATTACATGTACTTCACAAAGGCAACGACCACACCAGTTTCTCATAAGGCTAATCGGGTGAGCTCCACAGTTGGAATGGCTGGATATGCATGA
Predicted protein sequences of Glyma01g20230
>Glyma01g20230.1   sequence type=predicted peptide   gene model=Glyma01g20230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGRGSTLVHLLVVVLCLVAFGFAVAAERRRSVGTMQKIEGTNETFCSYSSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWVTFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCEALRKGVFVAGAVFVVVTMILNVYYYMYFTKATTTPVSHKANRVSSTVGMAGYA*






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