Glyma01g20130 - SoyBase

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Report for Sequence Feature Glyma01g20130

Feature Type:	gene_model
Chromosome:	Gm01
Start:	24561668
stop:	24562473
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g20130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF05938	PFAM	Plant self-incompatibility protein S1	JGI		ISS
UniRef100_G7JHZ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7JHZ8_MEDTR	SoyBase	E_val: 1.00E-74	ISS

Expression Patterns of Glyma01g20130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g20130 not represented in the dataset	Glyma01g20130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g20130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g080800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g20130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g20130

Limit To All Plant Sequences

>Glyma01g20130.1   sequence type=CDS   gene model=Glyma01g20130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTACCTATGGTGGTGGAAAAGCCTTTTTCAAAATCACCTTGTTTTCTATGTTCATTTTTGTAGCCTCTTCTTCCCAAGCTTCAAGTTCCGTGTGGAGCGAATTGCTTCATCCAAAATTAAGAGTCACGATAACTTCCAAAATACCAGGTGGGTTTGTGCGTGTTAAATGCATATCAAGCGAGAACGACATCAAGGGGGGGTATTTAGATTCCTCTGGCACAAAGCCATTCATATTTGATGTTAAACTCAAGTTTCTAACGACGATTAGATATAATTGTTTGTTGACACAAGGTGGGAAAGAAATTGGGCAATTTTTGGGGTTTCGAAGTGGTTCATATTGTGAAAAGGGTTGTACTTGGAAGCTTTACCCACATTATGCCCTACGCATATCTACTCGCCGTGGTTTTGTAAATCAAACGTATAAGCCAATAGGAAGCCCTGATGACCATACTTATGATTATTCCTAG

Predicted protein sequences of Glyma01g20130

Limit To All Plant Sequences

>Glyma01g20130.1   sequence type=predicted peptide   gene model=Glyma01g20130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVTYGGGKAFFKITLFSMFIFVASSSQASSSVWSELLHPKLRVTITSKIPGGFVRVKCISSENDIKGGYLDSSGTKPFIFDVKLKFLTTIRYNCLLTQGGKEIGQFLGFRSGSYCEKGCTWKLYPHYALRISTRRGFVNQTYKPIGSPDDHTYDYS*

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