Report for Sequence Feature Glyma01g19820
Feature Type: gene_model
Chromosome: Gm01
Start: 24220924
stop: 24227067
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g19820
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G77420 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:29093641-29095442 FORWARD LENGTH=382
SoyBase E_val: 1.00E-170 ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG1455
KOG
Lysophospholipase
JGI ISS
PTHR11614 Panther
PHOSPHOLIPASE-RELATED
JGI ISS
PTHR11614:SF20 Panther
LYSOPHOSPHOLIPASE
JGI ISS
PF12146 PFAM
Putative lysophospholipase
JGI ISS
UniRef100_G7K1K2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Monoglyceride lipase n=1 Tax=Medicago truncatula RepID=G7K1K2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1J6J7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6J7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g19820
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma01g19820 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g080600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g19820
Coding sequences of Glyma01g19820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g19820.1 sequence type=CDS gene model=Glyma01g19820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGCTCTCTGTGCCCTTCAGATTCCGATCACGGAACCTCCTCTCACCCTCTACACACATACCCATCACCTACCCTTCCAAGCATCAACCACCCTTTTTAACTAAGTTTGTCAACAAACCCAAGATTTCTAAACTAACGGTGAGAGCGCAGAGAAGGGCACCCATTGAAGGGCTGAGCGATGAGTTGAACGCTATAGCTCGTTGTAACCTTGACTTTGCTTACACTCGAAGAAGGGTCCGCGCTGCTTTCGCTGATATGCAGCAGCAGCTGGATCATTGCTTGTTCAAGAATGCTCCTGCTGGGATCAGAACTGAAGAATGGTACGAAAGGAATTCTAGGGGATTGGAAATTTTCTGCAAAAGCTGGATGCCAAAGCCTGGCATTCCAATCAAGGCCTCTGTGTGTTTCTGTCATGGATATGGTGATACTTGCACCTTCTTTTTTGAAGGTATAGCCAGGATAATTGCTGCTTCTGGGTACAGTGTCTTTGCAATGGACTATCCAGGTTTTGGTCTTTCAGAAGGATTGCATGGTTATATACCAAAATTTGATTATCTGGTTGATGATGTTATAGAGCATTATACAAAAATTAAAGCCAGACCTGATCTCAGTGGCTTGCCTCGATTTATATTAGGGCAGTCAATGGGTGGAGCAGTTTCTCTTAAAGTTCATTTGAGGGAGCCAAATAATTGGGATGGAATGATACTTGTAGCACCAATGTGTAAAATTGCAGAGGACGTGTTACCATCAGATGCAGTTCTGAAGGTATTAACTCTTTTGTCTAAAGTGATGCCAAAAGCAAAGCTCATCCAAAACCAGGATATAGCTGATCTGTTCTTCAGGGAACCAAGCAAAAGAAAATTGGCTGTTTACAATGTTATTTGTTATGATGATAATCCACGGTTGAGAACTGGCATGGAACTTTTAAGGACCACAAAAGAAATTGAGTCGCAAGTACACAAGGTCTCAGCGCCATTATTGATTCTTCATGGAGCAGAAGATAAGGTGACTGATCCATTAGTGAGCAAATTTCTTTATGAGAGAGCATCTAGCAAAGATAAGACTTTAAAGCTCTATGAAGGTGGTTACCACTGCATTTTGGAAGGGGAACCTGATGACAGAATATTTGCTGTACATGATGACATTGTCTCGTGGCTTGATTTTAGGTGTTCAATTAAATGA
Predicted protein sequences of Glyma01g19820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g19820.1 sequence type=predicted peptide gene model=Glyma01g19820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MELSVPFRFRSRNLLSPSTHIPITYPSKHQPPFLTKFVNKPKISKLTVRAQRRAPIEGLSDELNAIARCNLDFAYTRRRVRAAFADMQQQLDHCLFKNAPAGIRTEEWYERNSRGLEIFCKSWMPKPGIPIKASVCFCHGYGDTCTFFFEGIARIIAASGYSVFAMDYPGFGLSEGLHGYIPKFDYLVDDVIEHYTKIKARPDLSGLPRFILGQSMGGAVSLKVHLREPNNWDGMILVAPMCKIAEDVLPSDAVLKVLTLLSKVMPKAKLIQNQDIADLFFREPSKRKLAVYNVICYDDNPRLRTGMELLRTTKEIESQVHKVSAPLLILHGAEDKVTDPLVSKFLYERASSKDKTLKLYEGGYHCILEGEPDDRIFAVHDDIVSWLDFRCSIK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
