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Report for Sequence Feature Glyma01g19200

Feature Type:gene_model
Chromosome:Gm01
Start:23586982
stop:23590259
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g19200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68260AT Annotation by Michelle Graham. TAIR10: Thioesterase superfamily protein | chr1:25585976-25587601 REVERSE LENGTH=190 SoyBaseE_val: 4.00E-89ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
GO:0047617GO-mf Annotation by Michelle Graham. GO Molecular Function: acyl-CoA hydrolase activity SoyBaseN/AISS
PF03061PFAM Thioesterase superfamily JGI ISS
UniRef100_G7K1I9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thioesterase-like protein n=1 Tax=Medicago truncatula RepID=G7K1I9_MEDTR SoyBaseE_val: 2.00E-109ISS
UniRef100_I1J6J3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6J3_SOYBN SoyBaseE_val: 3.00E-147ISS

Expression Patterns of Glyma01g19200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g19200 not represented in the dataset
Glyma01g19200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g19200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g080400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g19200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g19200
>Glyma01g19200.2   sequence type=CDS   gene model=Glyma01g19200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCTACAACCACACTTCCTCGATGTCATTGCCTTCCCCATTGTACCTGAATACTACGTCGTTTCGCCTCACGCGCCAATCTCCTTTTCCTTTTCCCCGCCGGCGCTTCAATCCACCGGCTTTCCGATCAGTTTCGCCGTTGAGTTCCAGCCCCTCTGCATCACTCTTCGATCTCAGAGGGGGCAAAGGAATGAGTGGATTCCATGACGTTGAACTGAAGGTGCGCGACTATGAGTTGGATCAGTACGGTGTGGTTAACAATGCAGTTTATGCTAGTTATTGCCAGCACGGTCGTCATGAACTCTTGCAAAACATTGGTATTAATTGCGATGCTGTGGCTCGCAGTGGTGATGCATTGGCATTGTCTGAACTATCGCTCAAATTCCTTGCACCTCTAAGAAGTGGAGACAAATTTGTTGTAAGAGTTAGGATTTCTGGCTCTTCAGCTGCTCGTTTATACTTTGATCACTTCATCTATAAGCTGCCAAACCAAGAGCCTATTTTGGAAGCCAAGGCCATAGCGGTGTGGCTTGACAAAAACTATCGTCCTATACGAATTCCAGCAGAGATGAAGTCTAAATTTGTAAAGTTTATTCGAATTGAGGACTCTTAA
Predicted protein sequences of Glyma01g19200
>Glyma01g19200.2   sequence type=predicted peptide   gene model=Glyma01g19200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYNHTSSMSLPSPLYLNTTSFRLTRQSPFPFPRRRFNPPAFRSVSPLSSSPSASLFDLRGGKGMSGFHDVELKVRDYELDQYGVVNNAVYASYCQHGRHELLQNIGINCDAVARSGDALALSELSLKFLAPLRSGDKFVVRVRISGSSAARLYFDHFIYKLPNQEPILEAKAIAVWLDKNYRPIRIPAEMKSKFVKFIRIEDS*






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