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Report for Sequence Feature Glyma01g18780

Feature Type:gene_model
Chromosome:Gm01
Start:23303294
stop:23306986
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g18780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17880AT Annotation by Michelle Graham. TAIR10: basic transcription factor 3 | chr1:6152572-6153425 REVERSE LENGTH=165 SoyBaseE_val: 2.00E-83ISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG2240 KOG RNA polymerase II general transcription factor BTF3 and related proteins JGI ISS
PTHR10351Panther TRANSCRIPTION FACTOR BTF3 JGI ISS
PTHR10351:SF23Panther NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BET JGI ISS
PF01849PFAM NAC domain JGI ISS
UniRef100_B0BLA0UniRef Annotation by Michelle Graham. Most informative UniRef hit: CM0216.550.nc protein n=1 Tax=Lotus japonicus RepID=B0BLA0_LOTJA SoyBaseE_val: 9.00E-92ISS
UniRef100_C6T2G5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2G5_SOYBN SoyBaseE_val: 1.00E-110ISS

Expression Patterns of Glyma01g18780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g18780 not represented in the dataset
Glyma01g18780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g18780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g080200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g18780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g18780
>Glyma01g18780.1   sequence type=CDS   gene model=Glyma01g18780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTAGAAAAGTTGAAGAAGATGGCCAGTTCTGTTCGAACTGGTGGGAAGGGTACTATGAGAAGGAAGAAGAAAGCTGTCCACAAGACTACTACTACAGATGACAAAAGGCTTCAAAGCACCCTGAAGAGGATAGGAGTGAATGCTATCCCTGCAATTGAAGAAGTCAACATCTTTAAGGATGAAATAGTTATCCAGTTTTTAAACCCCAAAGTACAAGCATCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCACCACAAACAAAGAAGTTGCAGGATATTCTCCCCAACATCATCCACCAATTAGGGCCAGATAACTTAGAAAACCTGAAGAAGCTAGCTGAACAATTTCAGAAGCAGGTTCCTGAAGCAGGAGATGGTGCAACCGCAGCACAAGAGGATGATGATGATGCGGTCCCTGATCTTGTCCCAGGGGAGACTTTTGAGACAGCTGCTGAGGAGACTAAGTCTTAA
Predicted protein sequences of Glyma01g18780
>Glyma01g18780.1   sequence type=predicted peptide   gene model=Glyma01g18780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVEKLKKMASSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDEIVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPNIIHQLGPDNLENLKKLAEQFQKQVPEAGDGATAAQEDDDDAVPDLVPGETFETAAEETKS*






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