SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60580 | AT | Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein | chr3:22394007-22394873 FORWARD LENGTH=288 | SoyBase | E_val: 1.00E-62 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR11389 | Panther | ZINC FINGER PROTEIN | JGI | ISS | |
| PTHR11389:SF378 | Panther | gb def: gastrula zinc finger protein xlcgf46.1 | JGI | ISS | |
| UniRef100_O22090 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C2H2 zinc-finger protein ZPT3-3 n=1 Tax=Petunia x hybrida RepID=O22090_PETHY | SoyBase | E_val: 1.00E-69 | ISS |
| UniRef100_UPI0002337910 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337910 related cluster n=1 Tax=unknown RepID=UPI0002337910 | SoyBase | E_val: 0 | ISS |
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Glyma01g18606 not represented in the dataset |
Glyma01g18606 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g079900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g18606.1 sequence type=CDS gene model=Glyma01g18606 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAGACACAAGTGCAAGCTTTGCTTCAGAAGCTTCGCCAATGGAAGAGCATTGGGGGGTCACATGAGGTCTCACATGATGAACCTTCCTATCTCAAAGCCCGAAGAATTAGCCTCATCGCGAACGATCCAACTCAGCTTCGAAGCTGAGTCAGCTTCATCATCGTCATCGTCTTCTTCAGACGAAGAGGATGAGGATGATGAAAAGACTCTATGTTATGATCTCAGAGAGAATCCCAAGCGAAGCATTCGCCTCGTGGATCCTGAATTTTCGTTCGCAACAGCAGCAGACACTGGCTCCGTGATCCTCCACGACAGAGAGAGCGAGTCCGACGTAAGAAAGAAAGGTCTCGGATTCGAACATGAATCCACAAAGAAGTGCAAGACAGAATCGTGGGTGGACCACGACCCTGCGAGCTCTGTCTCCGATGCCACCACCGAGGAAGACGTGGCATTTTGTCTCATGATGCTGTCGAGGGACAAATGGAAGCGACAGAGGGATCAAGATCAACCCTGCCGATTTGCGGAAAGGGAAAATCAATACGAGGTGGAGGATCAAGAAGAAGAAGATGATGAAGAAGACGAGGAAGACGAAGACGACGAAGAAGCCTTCGAGGAGAGCGAGGAGTCTCAAGAAACATCGAAACAGTGCAAGAACCGTGTACGAGGACGGTACAAATGCGACACCTGCAACAAGGTGTTCCGATCCTACCAAGCATTGGGGGGTCACCGAGCCAGTCACAAGAAGATCAAAGTGAACGGTGGTGGTAGAGAACAAGAACTTGAACACAACAAGAAGAAGAGTGGAACATGTGTTGTTGTGGAAAAGAAAACTCACGAGTGCCCCGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCGCTTGGGGGACACAAGAGAACCCATGTTACTGGCTCAGCAGCAACTGCAGCTGCAATCGCAACAACACTTCCGTCAAGTTCCGCAAAGTTTGGAAACAGTTTCATAGATCTCAACCTCCCTGCTCCTATTGACGAAGACGATGCTAGCCAAATCGAGAACTCTGCTGTTTCCGATGCAGAATTCGTCAAAATCCATTAG
>Glyma01g18606.1 sequence type=predicted peptide gene model=Glyma01g18606 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRHKCKLCFRSFANGRALGGHMRSHMMNLPISKPEELASSRTIQLSFEAESASSSSSSSSDEEDEDDEKTLCYDLRENPKRSIRLVDPEFSFATAADTGSVILHDRESESDVRKKGLGFEHESTKKCKTESWVDHDPASSVSDATTEEDVAFCLMMLSRDKWKRQRDQDQPCRFAERENQYEVEDQEEEDDEEDEEDEDDEEAFEESEESQETSKQCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNGGGREQELEHNKKKSGTCVVVEKKTHECPVCFRVFASGQALGGHKRTHVTGSAATAAAIATTLPSSSAKFGNSFIDLNLPAPIDEDDASQIENSAVSDAEFVKIH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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