Glyma01g17870 - SoyBase

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Report for Sequence Feature Glyma01g17870

Feature Type:	gene_model
Chromosome:	Gm01
Start:	22202474
stop:	22210341
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g17870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51170	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:20793906-20795330 REVERSE LENGTH=285	SoyBase	E_val: 2.00E-102	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3102	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13522	Panther	UNCHARACTERIZED	JGI		ISS
PF09749	PFAM	Uncharacterised conserved protein	JGI		ISS
UniRef100_B1WBH1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOC100145778 protein n=1 Tax=Xenopus (Silurana) tropicalis RepID=B1WBH1_XENTR	SoyBase	E_val: 2.00E-18	ISS
UniRef100_I1J6I2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6I2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g17870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g17870 not represented in the dataset	Glyma01g17870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g17870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g079300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g17870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g17870

Limit To All Plant Sequences

>Glyma01g17870.2   sequence type=transcript   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTGTAAGCGTTTTTCTTCTCTTCTTTTTTTCTTCTTTCACCTTCGAATCGTTGATGCAGCGTCCGATTTATTCTTTTTCTGTGTAGTTTTTGATTTTCGGTTTCTGACTATTATTTCTTAAAAAATTACAGATTCTTTGCTTTTGGTTTTGGTTGATTGAAGGCCTTCACGGCATTCGTTGCGGCATTTTAATCGATTTATCCAAGCAGATCTTGGCATGTTATAAAGGGTAGACTGCAAAATGGAGGCATTGAAAGCATCTTATGGGGATGGATCTTCTGATTCAGATTCTGAATCTGCCCATTCAATTCCAACTTCTGCTCCCTCAGCAGTATTCACACCCTTGCCACCACCTCCTATCTCACTCCTTGATCCTCCAAGCATTCTTGATCTGCAGATAGGTCAGACAACTAGACTTAGGAGCTTCCCTCATGTCGATGGTAACTATGCCTTACATGTATATATACCAATTTTTCTTTACAGTTTACATTTCATCTCCATCAAAGAAAGAACTAGTTGCTTTCTTGAAAAAAATCTCCTCTCGGGAACCACGTCTTAATGTTGTTGATGTTGATGTCCCACTAAACATCCTCTGCCAAAATGATGAGAAGCTCGAACAAGTTACCTTAGGAAGAGAATTTCACATAAGTTTGGGAAGAACTGTCCCAATACGAGTACACCAGATTGACTCAGTGGTCTCAATGCTCAGACAGAAGCTTCAAATTCAACACCAGTATTGGATCGACTTTAACAAGTGGGAGGTTTTTGTTAATGATGATCACACACGCTCCTTTCTCTCAGCAGAAGTTGTTCAAGGAGGGTTAGTAGAGATAACGAAGCAAATTGAAGTAGTCAATGCAATTTACAGGCTTCATAATCTTCCTGAGTTTTACAAGGATCCACGTCCTCACATATCCTTAGCATGGGCCCTGGGTGACATCGCGCACTCTCTAAAGAAAATTGTCGACGAGGAAATGAAGTGTGCTGTTGGTAAATCTTTAAAGAAGTGTATTTTTAGCTGTAAATTCAAAAGTATTGAATGTAAGATTGGCAAGAAAGCATATACAATATGCAAAATTTCTGATGGACAATAATTGTGCACTTTAAAGGAAGAGCAAGGGATTTCCTGAAATATTTCAGGTTGCATGGAATTCTGCTTTTCTAAAATGGTGGGTTTCTTGGTTCTTTATCCCTTGTGAGTTGTAGACTAGACCCATGCCTTATGCGAGTTCATCAAAGCTTTGTAGAGATTACTTAAATTGATCGAAGGTGCAACAATGTTATTTGAATTTATTTCAGATATTACGTGTAAGTGTAATTGGAATTTCTACAAACCTATTTCAAAGGATTTCAATGTGTAATTTTGCTAGATGCCATGGGAATCATACAAATTGACATACAC

>Glyma01g17870.3   sequence type=transcript   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGTAATCCATTTCTAACAGCAGAACAGAGTCCCAAAGTTGCAGAGACGTTGAGGCAGACTTGGCCGATCTACCCAAACTCTAAAACCCTTTCTCTCTTTTTTGTACAACCGACAGAGAGACCATTCCTGCTAGAGACTGTTGTCCAAACTTTAAGATCTTGGCATGTTATAAAGGGTAGACTGCAAAATGGAGGCATTGAAAGCATCTTATGGGGATGGATCTTCTGATTCAGATTCTGAATCTGCCCATTCAATTCCAACTTCTGCTCCCTCAGCAGTATTCACACCCTTGCCACCACCTCCTATCTCACTCCTTGATCCTCCAAGCATTCTTGATCTGCAGATAGGTCAGACAACTAGACTTAGGAGCTTCCCTCATGTCGATGGTAACTATGCCTTACATGTATATATACCAATTTACATTTCATCTCCATCAAAGAAAGAACTAGTTGCTTTCTTGAAAAAAATCTCCTCTCGGGAACCACGTCTTAATGTTGTTGATGTTGATGTCCCACTAAACATCCTCTGCCAAAATGATGAGAAGCTCGAACAAGTTACCTTAGGAAGAGAATTTCACATAAGTTTGGGAAGAACTGTCCCAATACGAGTACACCAGATTGACTCAGTGGTCTCAATGCTCAGACAGAAGCTTCAAATTCAACACCAGTATTGGATCGACTTTAACAAGTGGGAGGTTTTTGTTAATGATGATCACACACGCTCCTTTCTCTCAGCAGAAGTTGTTCAAGGAGGGTTAGTAGAGATAACGAAGCAAATTGAAGTAGTCAATGCAATTTACAGGCTTCATAATCTTCCTGAGTTTTACAAGGATCCACGTCCTCACATATCCTTAGCATGGGCCCTGGGTGACATCGCGCACTCTCTAAAGAAAATTGTCGACGAGGAAATGAAGTGTGCTGTTGGTAAATCTTTAAAGAAGTGTATTTTTAGCTGTAAATTCAAAAGTATTGAATGTAAGATTGGCAAGAAAGCATATACAATATGCAAAATTTCTGATGGACAATAATTGTGCACTTTAAAGGAAGAGCAAGGGATTTCCTGAAATATTTCAGGTTGCATGGAATTCTGCTTTTCTAAAATGGTGGGTTTCTTGGTTCTTTATCCCTTGTGAGTTGTAGACTAGACCCATGCCTTATGCGAGTTCATCAAAGCTTTGTAGAGATTACTTAAATTGATCGAAGGTGCAACAATGTTATTTGAATTTATTTCAGATATTACGTGTAAGTGTAATTGGAATTTCTACAAACCTATTTCAAAGGATTTCAATGTGTAATTTTGCTAGATGCCATGGGAATCATACAAATTGACATACAC

>Glyma01g17870.4   sequence type=transcript   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATCTTCTGATTATTTTAATTGTTTTAGAAAATAATCGGAAAATATTAATGAATTAAAAAAATCTTTCTTTGCTGCTGCCTCCGTTCCCCCCTTCTCATAAACAACGCGTTTTCTCTTCTGCTTCGTATCTATTCTTTGCTTTTGGTTTTGGTTGATTGAAGGCCTTCACGGCATTCGTTGCGGCATTTTAATCGATTTATCCAAGCAGATCTTGGCATGTTATAAAGGGTAGACTGCAAAATGGAGGCATTGAAAGCATCTTATGGGGATGGATCTTCTGATTCAGATTCTGAATCTGCCCATTCAATTCCAACTTCTGCTCCCTCAGCAGTATTCACACCCTTGCCACCACCTCCTATCTCACTCCTTGATCCTCCAAGCATTCTTGATCTGCAGATAGGTCAGACAACTAGACTTAGGAGCTTCCCTCATGTCGATGGTAACTATGCCTTACATGTATATATACCAATTTACATTTCATCTCCATCAAAGAAAGAACTAGTTGCTTTCTTGAAAAAAATCTCCTCTCGGGAACCACGTCTTAATGTTGTTGATGTTGATGTCCCACTAAACATCCTCTGCCAAAATGATGAGAAGCTCGAACAAGTTACCTTAGGAAGAGAATTTCACATAAGTTTGGGAAGAACTGTCCCAATACGAGTACACCAGATTGACTCAGTGGTCTCAATGCTCAGACAGAAGCTTCAAATTCAACACCAGTATTGGATCGACTTTAACAAGTGGGAGGTTTTTGTTAATGATGATCACACACGCTCCTTTCTCTCAGCAGAAGTTGTTCAAGGAGGGTTAGTAGAGATAACGAAGCAAATTGAAGTAGTCAATGCAATTTACAGGCTTCATAATCTTCCTGAGTTTTACAAGGATCCACGTCCTCACATATCCTTAGCATGGGCCCTGGGTGACATCGCGCACTCTCTAAAGAAAATTGTCGACGAGGAAATGAAGTGTGCTGTTGGTAAATCTTTAAAGAAGTGTATTTTTAGCTGTAAATTCAAAAGTATTGAATGTAAGATTGGCAAGAAAGCATATACAATATGCAAAATTTCTGATGGACAATAATTGTGCACTTTAAAGGAAGAGCAAGGGATTTCCTGAAATATTTCAGGTTGCATGGAATTCTGCTTTTCTAAAATGGTGGGTTTCTTGGTTCTTTATCCCTTGTGAGTTGTAGACTAGACCCATGCCTTATGCGAGTTCATCAAAGCTTTGTAGAGATTACTTAAATTGATCGAAGGTGCAACAATGTTATTTGAATTTATTTCAGATATTACGTGTAAGTGTAATTGGAATTTCTACAAACCTATTTCAAAGGATTTCAATGTGTAATTTTGCTAGATGCCATGGGAATCATACAAATTGACATACACAAAGAACCTTCGCTTGAATTTTTTAAATTTTAA

Coding sequences of Glyma01g17870

Limit To All Plant Sequences

>Glyma01g17870.1   sequence type=CDS   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCATTGAAAGCATCTTATGGGGATGGATCTTCTGATTCAGATTCTGAATCTGCCCATTCAATTCCAACTTCTGCTCCCTCAGCAGTATTCACACCCTTGCCACCACCTCCTATCTCACTCCTTGATCCTCCAAGCATTCTTGATCTGCAGATAGGTCAGACAACTAGACTTAGGAGCTTCCCTCATGTCGATGGTAACTATGCCTTACATGTATATATACCAATTTACATTTCATCTCCATCAAAGAAAGAACTAGTTGCTTTCTTGAAAAAAATCTCCTCTCGGGAACCACGTCTTAATGTTGTTGATGTTGATGTCCCACTAAACATCCTCTGCCAAAATGATGAGAAGCTCGAACAAGTTACCTTAGGAAGAGAATTTCACATAAGTTTGGGAAGAACTGTCCCAATACGAGTACACCAGATTGACTCAGTGGTCTCAATGCTCAGACAGAAGCTTCAAATTCAACACCAGTATTGGATCGACTTTAACAAGTGGGAGGTTTTTGTTAATGATGATCACACACGCTCCTTTCTCTCAGCAGAAGTTGTTCAAGGAGGGTTAGTAGAGATAACGAAGCAAATTGAAGTAGTCAATGCAATTTACAGGCTTCATAATCTTCCTGAGTTTTACAAGGATCCACGTCCTCACATATCCTTAGCATGGGCCCTGGGTGACATCGCGCACTCTCTAAAGAAAATTGTCGACGAGGAAATGAAGTGTGCTGTTGGTAAATCTTTAAAGAAGTGTATTTTTAGCTGTAAATTCAAAAGTATTGAATGTAAGATTGGCAAGAAAGCATATACAATATGCAAAATTTCTGATGGACAATAA

>Glyma01g17870.2   sequence type=CDS   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATGGTAACTATGCCTTACATGTATATATACCAATTTTTCTTTACAGTTTACATTTCATCTCCATCAAAGAAAGAACTAGTTGCTTTCTTGAAAAAAATCTCCTCTCGGGAACCACGTCTTAATGTTGTTGATGTTGATGTCCCACTAAACATCCTCTGCCAAAATGATGAGAAGCTCGAACAAGTTACCTTAGGAAGAGAATTTCACATAAGTTTGGGAAGAACTGTCCCAATACGAGTACACCAGATTGACTCAGTGGTCTCAATGCTCAGACAGAAGCTTCAAATTCAACACCAGTATTGGATCGACTTTAACAAGTGGGAGGTTTTTGTTAATGATGATCACACACGCTCCTTTCTCTCAGCAGAAGTTGTTCAAGGAGGGTTAGTAGAGATAACGAAGCAAATTGAAGTAGTCAATGCAATTTACAGGCTTCATAATCTTCCTGAGTTTTACAAGGATCCACGTCCTCACATATCCTTAGCATGGGCCCTGGGTGACATCGCGCACTCTCTAAAGAAAATTGTCGACGAGGAAATGAAGTGTGCTGTTGGTAAATCTTTAAAGAAGTGTATTTTTAGCTGTAAATTCAAAAGTATTGAATGTAAGATTGGCAAGAAAGCATATACAATATGCAAAATTTCTGATGGACAATAA

>Glyma01g17870.3   sequence type=CDS   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCATTGAAAGCATCTTATGGGGATGGATCTTCTGATTCAGATTCTGAATCTGCCCATTCAATTCCAACTTCTGCTCCCTCAGCAGTATTCACACCCTTGCCACCACCTCCTATCTCACTCCTTGATCCTCCAAGCATTCTTGATCTGCAGATAGGTCAGACAACTAGACTTAGGAGCTTCCCTCATGTCGATGGTAACTATGCCTTACATGTATATATACCAATTTACATTTCATCTCCATCAAAGAAAGAACTAGTTGCTTTCTTGAAAAAAATCTCCTCTCGGGAACCACGTCTTAATGTTGTTGATGTTGATGTCCCACTAAACATCCTCTGCCAAAATGATGAGAAGCTCGAACAAGTTACCTTAGGAAGAGAATTTCACATAAGTTTGGGAAGAACTGTCCCAATACGAGTACACCAGATTGACTCAGTGGTCTCAATGCTCAGACAGAAGCTTCAAATTCAACACCAGTATTGGATCGACTTTAACAAGTGGGAGGTTTTTGTTAATGATGATCACACACGCTCCTTTCTCTCAGCAGAAGTTGTTCAAGGAGGGTTAGTAGAGATAACGAAGCAAATTGAAGTAGTCAATGCAATTTACAGGCTTCATAATCTTCCTGAGTTTTACAAGGATCCACGTCCTCACATATCCTTAGCATGGGCCCTGGGTGACATCGCGCACTCTCTAAAGAAAATTGTCGACGAGGAAATGAAGTGTGCTGTTGGTAAATCTTTAAAGAAGTGTATTTTTAGCTGTAAATTCAAAAGTATTGAATGTAAGATTGGCAAGAAAGCATATACAATATGCAAAATTTCTGATGGACAATAA

>Glyma01g17870.4   sequence type=CDS   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCATTGAAAGCATCTTATGGGGATGGATCTTCTGATTCAGATTCTGAATCTGCCCATTCAATTCCAACTTCTGCTCCCTCAGCAGTATTCACACCCTTGCCACCACCTCCTATCTCACTCCTTGATCCTCCAAGCATTCTTGATCTGCAGATAGGTCAGACAACTAGACTTAGGAGCTTCCCTCATGTCGATGGTAACTATGCCTTACATGTATATATACCAATTTACATTTCATCTCCATCAAAGAAAGAACTAGTTGCTTTCTTGAAAAAAATCTCCTCTCGGGAACCACGTCTTAATGTTGTTGATGTTGATGTCCCACTAAACATCCTCTGCCAAAATGATGAGAAGCTCGAACAAGTTACCTTAGGAAGAGAATTTCACATAAGTTTGGGAAGAACTGTCCCAATACGAGTACACCAGATTGACTCAGTGGTCTCAATGCTCAGACAGAAGCTTCAAATTCAACACCAGTATTGGATCGACTTTAACAAGTGGGAGGTTTTTGTTAATGATGATCACACACGCTCCTTTCTCTCAGCAGAAGTTGTTCAAGGAGGGTTAGTAGAGATAACGAAGCAAATTGAAGTAGTCAATGCAATTTACAGGCTTCATAATCTTCCTGAGTTTTACAAGGATCCACGTCCTCACATATCCTTAGCATGGGCCCTGGGTGACATCGCGCACTCTCTAAAGAAAATTGTCGACGAGGAAATGAAGTGTGCTGTTGGTAAATCTTTAAAGAAGTGTATTTTTAGCTGTAAATTCAAAAGTATTGAATGTAAGATTGGCAAGAAAGCATATACAATATGCAAAATTTCTGATGGACAATAA

Predicted protein sequences of Glyma01g17870

Limit To All Plant Sequences

>Glyma01g17870.1   sequence type=predicted peptide   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEALKASYGDGSSDSDSESAHSIPTSAPSAVFTPLPPPPISLLDPPSILDLQIGQTTRLRSFPHVDGNYALHVYIPIYISSPSKKELVAFLKKISSREPRLNVVDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQIDSVVSMLRQKLQIQHQYWIDFNKWEVFVNDDHTRSFLSAEVVQGGLVEITKQIEVVNAIYRLHNLPEFYKDPRPHISLAWALGDIAHSLKKIVDEEMKCAVGKSLKKCIFSCKFKSIECKIGKKAYTICKISDGQ*

>Glyma01g17870.2   sequence type=predicted peptide   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMVTMPYMYIYQFFFTVYISSPSKKELVAFLKKISSREPRLNVVDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQIDSVVSMLRQKLQIQHQYWIDFNKWEVFVNDDHTRSFLSAEVVQGGLVEITKQIEVVNAIYRLHNLPEFYKDPRPHISLAWALGDIAHSLKKIVDEEMKCAVGKSLKKCIFSCKFKSIECKIGKKAYTICKISDGQ*

>Glyma01g17870.3   sequence type=predicted peptide   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEALKASYGDGSSDSDSESAHSIPTSAPSAVFTPLPPPPISLLDPPSILDLQIGQTTRLRSFPHVDGNYALHVYIPIYISSPSKKELVAFLKKISSREPRLNVVDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQIDSVVSMLRQKLQIQHQYWIDFNKWEVFVNDDHTRSFLSAEVVQGGLVEITKQIEVVNAIYRLHNLPEFYKDPRPHISLAWALGDIAHSLKKIVDEEMKCAVGKSLKKCIFSCKFKSIECKIGKKAYTICKISDGQ*

>Glyma01g17870.4   sequence type=predicted peptide   gene model=Glyma01g17870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEALKASYGDGSSDSDSESAHSIPTSAPSAVFTPLPPPPISLLDPPSILDLQIGQTTRLRSFPHVDGNYALHVYIPIYISSPSKKELVAFLKKISSREPRLNVVDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQIDSVVSMLRQKLQIQHQYWIDFNKWEVFVNDDHTRSFLSAEVVQGGLVEITKQIEVVNAIYRLHNLPEFYKDPRPHISLAWALGDIAHSLKKIVDEEMKCAVGKSLKKCIFSCKFKSIECKIGKKAYTICKISDGQ*

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