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Report for Sequence Feature Glyma01g16360

Feature Type:gene_model
Chromosome:Gm01
Start:20233419
stop:20235447
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g16360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54980AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr5:22315799-22316560 FORWARD LENGTH=194 SoyBaseE_val: 5.00E-52ISS
GO:0045333GO-bp Annotation by Michelle Graham. GO Biological Process: cellular respiration SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005747GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I SoyBaseN/AISS
GO:0008137GO-mf Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF41Panther NADH DEHYDROGENASE I CHAIN G JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_C6T2J5UniRef Annotation by Michelle Graham. Best UniRef hit: CASP-like protein 4 n=1 Tax=Glycine max RepID=CSPL4_SOYBN SoyBaseE_val: 3.00E-132ISS
UniRef100_C6T2J5UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein 4 n=1 Tax=Glycine max RepID=CSPL4_SOYBN SoyBaseE_val: 3.00E-132ISS

Expression Patterns of Glyma01g16360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g16360 not represented in the dataset
Glyma01g16360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g16360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g077100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g16360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g16360
>Glyma01g16360.1   sequence type=CDS   gene model=Glyma01g16360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACACATATTGATGATAGTGCATCTGGGAAGAATCACCATCTTCCAATGCTTTGGTTTTTTGATTCTTCTCTGAGGCTTTGTGCTATTCCTCTATCTGTGGCAACCATGTGGATCACTGTGACTAACAAGGAGGACAACAGCAGCTATGGAATGCTGAAATATAACAACCTCTCTGCTCTAAAGTATATGGTTTTAGTCAGTGCCCTCTGTGCTTGCTATGCTCTTCTTGCTGCAGCTTGCTCCTTGGTCAGATGTTTTGTATCCAAAGCTTGGATTTTCTTTGTCTCTGATCAGATTGTGGCATATTTAGCGATCACATCAGTTGCTGCAGTAATGGAGATGTATTACCTGGCTTACAATGGTGCTAAGGAAGATTCTTGGAGTGAAGCCTGCAGTTCCTATGGCAGTTTTTGCAGCAAAGTCAAGTTGGCTTTGATACTCCATACGATCACATTTTGCTGCTTCTTTGTTATAGCCGTGATTTCAGCTTTTCGAGCGTTTAGTGTCTTTGATCCTCCTTTTGTCAATTCTCAAGAGGTGCAAGGAGATTGA
Predicted protein sequences of Glyma01g16360
>Glyma01g16360.1   sequence type=predicted peptide   gene model=Glyma01g16360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTHIDDSASGKNHHLPMLWFFDSSLRLCAIPLSVATMWITVTNKEDNSSYGMLKYNNLSALKYMVLVSALCACYALLAAACSLVRCFVSKAWIFFVSDQIVAYLAITSVAAVMEMYYLAYNGAKEDSWSEACSSYGSFCSKVKLALILHTITFCCFFVIAVISAFRAFSVFDPPFVNSQEVQGD*






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