Glyma01g16250 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g16250

Feature Type:	gene_model
Chromosome:	Gm01
Start:	20048201
stop:	20050535
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g16250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38180	AT	Annotation by Michelle Graham. TAIR10: FAR1-related sequence 5 \| chr4:17906702-17909404 REVERSE LENGTH=788	SoyBase	E_val: 4.00E-45	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
UniRef100_A2Q1A1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FAR1; Zinc finger, SWIM-type n=1 Tax=Medicago truncatula RepID=A2Q1A1_MEDTR	SoyBase	E_val: 2.00E-139	ISS
UniRef100_G7KEE0	UniRef	Annotation by Michelle Graham. Best UniRef hit: FAR1-related protein n=1 Tax=Medicago truncatula RepID=G7KEE0_MEDTR	SoyBase	E_val: 4.00E-150	ISS

Expression Patterns of Glyma01g16250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g16250 not represented in the dataset	Glyma01g16250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g16250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma01g16250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g16250

Limit To All Plant Sequences

>Glyma01g16250.1   sequence type=CDS   gene model=Glyma01g16250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTATATATACCATTGATGTTGGCTTTAGTGTGTGTCGTTTATCGAAGACTAAAGTTAATGAAGGGAATATACTGTGGAAGTATTTTGTTTGCTCAAAAGAAGGTTATAGACCAAATAAGAAAAAAGTGGTGGGCGAAGGCAAATCAACTGTTAAGACTAGAAGAAGGAGTTCTACTAGAGTAAGATGCAATGCAAAGGTTGTTTTCAAATGGGTAGATGAAGGCAAATATAAACTTGACCAATTTCATGAAAGTCATACACATTCACTTTCTTCACCTACGAAGAAACATTTTTTGAGATCAACAAGAATAGTTAATCCTATTCACAAAGATTTAAAAACCTTGCTTAAAGATTTTGTTGCACATGTTTTTATTGATAATTTCAAGAGGAAACAAAAAGCAAATCCATCATTCTATTATGCACATAAGGTAGATGGCGAAGGTAGACTAAAATATGTTTTTTGGGTAGATGGTAATTGTAGGAAGAATTATTCATTATTTGTGGATGTGATCTCATTTGATACTACATATAGAGCAAACAAATATTCAATGAAAATTGATTCATTCATATGGTTGTTTGAAAAGTTTTTGGAAGTAATGAGGGGACGTCAGCCAAATCTTATAATAACATATCAAGACCATGCTATGAAAGTTGATTTTGTATGTGACATTATGAAAAAAGTTTATGAAAAAGCGGGTGTCACTTTGAATGCTAACAAGGATTTCAATGAGAATTTCAAGTCTTGTGTTTGGAAATCAAAGACACCAGATGATTTTGAGCCAACATGTGAATCTATAATTACTATGTTTAAGTTAGAAAAGAATGATTGGCTCTCACATATGTATGATATTCGAAGCATGTGGATCCCAACTTACTTTAAAGACATTTTTTTGCTGGGTGAGAATTCTTTCTTTGGTAATGTTTTGAATCCGTATGTTAGCTTGGTTGAATTTTGGGTGAGGTTTGATTCTAAAATAGAAGCACAAAGGCAAGATTTATTGGCTGACAATAATTTGCTTCATTCCTTGCCGTCACTAAAGTCAGATCATAGTTTAAAGAAGCATACAAGAGATGTTTATACTCATGATAACTTTTATATTTTTCAAGATAAGTTCTGGATAAGATGTTTAAATTATGGAGTTAAAGGTATGAAAGAGGGAGATGGAGAGGAAATATTTCATGTAACTAATAACATTGAAAATAAGGGCATACTTTGTCAGCTCATACTTTTTGTCTTGAAAGGGAAAGGTTTAAATGAGATACCAAGTAATTACATTGTGCATAGGTGGACTATGTTGGCGAATAGAAAACCTATTTTTGATATTGCTAACGATTTCCTAGAAAACGTCATTATTGGCTACAATATTCCTATAGATGTGGAAATTCTTCAACCACAATTGTCCAAGACAAAAGGAAGTGGTAAGTGA

Predicted protein sequences of Glyma01g16250

Limit To All Plant Sequences

>Glyma01g16250.1   sequence type=predicted peptide   gene model=Glyma01g16250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIIYTIDVGFSVCRLSKTKVNEGNILWKYFVCSKEGYRPNKKKVVGEGKSTVKTRRRSSTRVRCNAKVVFKWVDEGKYKLDQFHESHTHSLSSPTKKHFLRSTRIVNPIHKDLKTLLKDFVAHVFIDNFKRKQKANPSFYYAHKVDGEGRLKYVFWVDGNCRKNYSLFVDVISFDTTYRANKYSMKIDSFIWLFEKFLEVMRGRQPNLIITYQDHAMKVDFVCDIMKKVYEKAGVTLNANKDFNENFKSCVWKSKTPDDFEPTCESIITMFKLEKNDWLSHMYDIRSMWIPTYFKDIFLLGENSFFGNVLNPYVSLVEFWVRFDSKIEAQRQDLLADNNLLHSLPSLKSDHSLKKHTRDVYTHDNFYIFQDKFWIRCLNYGVKGMKEGDGEEIFHVTNNIENKGILCQLILFVLKGKGLNEIPSNYIVHRWTMLANRKPIFDIANDFLENVIIGYNIPIDVEILQPQLSKTKGSGK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain