Glyma01g16140 - SoyBase

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Report for Sequence Feature Glyma01g16140

Feature Type:	gene_model
Chromosome:	Gm01
Start:	20041372
stop:	20043743
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g16140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65680	AT	Annotation by Michelle Graham. TAIR10: expansin B2 \| chr1:24427266-24428399 FORWARD LENGTH=273	SoyBase	E_val: 3.00E-113	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0009831	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification involved in multidimensional cell growth	SoyBase	N/A	ISS
GO:0019953	GO-bp	Annotation by Michelle Graham. GO Biological Process: sexual reproduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_Q39802	UniRef	Annotation by Michelle Graham. Best UniRef hit: Cytokinin induced message n=1 Tax=Glycine max RepID=Q39802_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q39802	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin induced message n=1 Tax=Glycine max RepID=Q39802_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma01g16140

Locus	Gene Symbol	Protein Name
	EXPB1	beta-expansin gene 1

Expression Patterns of Glyma01g16140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g16140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g077000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g16140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g16140

Limit To All Plant Sequences

>Glyma01g16140.1   sequence type=CDS   gene model=Glyma01g16140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTACACTTCAACGTGCATTATCTGAACTACTCACCCTAATAGCTATTCTCTCAATATTCCTAGTGATCCCTTCCTTTTGTTTCAACCCCAAAAAGCTTTATAATGCTTCATATTATTCTCCATCTAGTTCAGATTGGTCACCTGCAGTGGCCACTTGGTATGGACCTGCCAATGGAGATGGAAGTGAAGGTGGAGCTTGTGGATATGGTAACGCTGTTGGGCAACCTCCATTTTCTTCTTTAATATCCGCGGGAAGCCCTCTTATATATGACTCTGGCAAAGGATGTGGTTCTTGTTATGAGGTGAAATGCACAGGGAATTCTGCATGCTCAGGCAACCCCGTGAAAGTAGTCATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGATCTGAGTGGCAATGCTTTTGGAGCAATGGCAATTTCGGGCCAAGATGAGAATCTACGCAATGCAGGAAAAATAAACATTCAGCACAGAAGAATTGAATGCAACTATCCCGGTAGGTCAATAGCTTTCCACGTGGATTCTGGCTCAAACCAAGAATATTTTGCTACCTTGGTTGAATATGAGGATGGGGATGGTGACCTTGCCAAGGTTGAACTCAAGGAAGCACTTGATTCAGGGTCATGGGATTCCATGCAACAATCATGGGGTGCAGTTTGGAAATTTGACAAGGGCTCACCACTGAGAGCACCATTCTCTATCAAGCTAACCACACTTGAGTCTGGCCAGACCATTGTGGCCAACAATGTGATCCCTGCAGGGTGGACTCCTGGTCAGACTTACAGATCGATTGTGAATTTTGCAACCTAA

Predicted protein sequences of Glyma01g16140

Limit To All Plant Sequences

>Glyma01g16140.1   sequence type=predicted peptide   gene model=Glyma01g16140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALTLQRALSELLTLIAILSIFLVIPSFCFNPKKLYNASYYSPSSSDWSPAVATWYGPANGDGSEGGACGYGNAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSACSGNPVKVVITDECAGCGSDAQYHFDLSGNAFGAMAISGQDENLRNAGKINIQHRRIECNYPGRSIAFHVDSGSNQEYFATLVEYEDGDGDLAKVELKEALDSGSWDSMQQSWGAVWKFDKGSPLRAPFSIKLTTLESGQTIVANNVIPAGWTPGQTYRSIVNFAT*

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