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Report for Sequence Feature Glyma01g15687

Feature Type:gene_model
Chromosome:Gm01
Start:19474757
stop:19475786
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g15687
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49640AT Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein | chr3:18400480-18402809 REVERSE LENGTH=329 SoyBaseE_val: 8.00E-42ISS
GO:0006808GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of nitrogen utilization SoyBaseN/AISS
GO:0008033GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA processing SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0017150GO-mf Annotation by Michelle Graham. GO Molecular Function: tRNA dihydrouridine synthase activity SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
PTHR11082Panther TRNA-DIHYDROURIDINE SYNTHASE JGI ISS
PTHR11082:SF4Panther NITROGEN REGULATION PROTEIN NIFR3-RELATED JGI ISS
PF01207PFAM Dihydrouridine synthase (Dus) JGI ISS
UniRef100_I1J6V8UniRef Annotation by Michelle Graham. Most informative UniRef hit: tRNA-dihydrouridine synthase n=3 Tax=Glycine max RepID=I1J6V8_SOYBN SoyBaseE_val: 7.00E-80ISS
UniRef100_I1J6V8UniRef Annotation by Michelle Graham. Best UniRef hit: tRNA-dihydrouridine synthase n=3 Tax=Glycine max RepID=I1J6V8_SOYBN SoyBaseE_val: 7.00E-80ISS

Expression Patterns of Glyma01g15687
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g15687 not represented in the dataset
Glyma01g15687 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g15687 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g076300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g15687
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g15687
>Glyma01g15687.1   sequence type=CDS   gene model=Glyma01g15687   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACTTACAACCGGCGTTTTCCGTGGAAACAAAAAAAGGGGCAACATGGGAACATAGGATTTGTCAAACCCATACGACAAACATGGAGTACCGCAACAAACTTGTTCTCGCCCCTATGGTTCGCGTTGGCACTCTCCCATTTAGATTACTAGCTGCTCAATATGGTGCAGATATCACTTACAGCGAGGAAATCATTTACCACAGGATGCTCAAGTGCGACCACCAAATCAACGAACTCATTGGATCCACTGATTTTGTGGAGAAGGGGACAAAAAATGTTGTGTTTAGAACCTGCGATGAAGAAAAGGATACGGTTGTATTTCAAATAGGCACATCAAATGCTCTGAGGGCCCTAGCTACTGCTCAGTTAGTGCAAGTTAATTGTGTATTTTGTTTCCCTTTTTACACTGAAGTTGATATGTGA
Predicted protein sequences of Glyma01g15687
>Glyma01g15687.1   sequence type=predicted peptide   gene model=Glyma01g15687   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLQPAFSVETKKGATWEHRICQTHTTNMEYRNKLVLAPMVRVGTLPFRLLAAQYGADITYSEEIIYHRMLKCDHQINELIGSTDFVEKGTKNVVFRTCDEEKDTVVFQIGTSNALRALATAQLVQVNCVFCFPFYTEVDM*






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