Glyma01g15506 - SoyBase

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Report for Sequence Feature Glyma01g15506

Feature Type:	gene_model
Chromosome:	Gm01
Start:	18952414
stop:	18962622
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g15506

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00030	AT	Annotation by Michelle Graham. TAIR10: Plastid-lipid associated protein PAP / fibrillin family protein \| chr4:13565-14366 FORWARD LENGTH=212	SoyBase	E_val: 2.00E-94	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
PF04755	PFAM	PAP fibrillin	JGI		ISS
UniRef100_B9RD52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Structural molecule, putative n=1 Tax=Ricinus communis RepID=B9RD52_RICCO	SoyBase	E_val: 7.00E-102	ISS
UniRef100_UPI0002337820	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337820 related cluster n=1 Tax=unknown RepID=UPI0002337820	SoyBase	E_val: 1.00E-157	ISS

Expression Patterns of Glyma01g15506

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g15506 not represented in the dataset	Glyma01g15506 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g15506 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g076100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g15506

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g15506

Limit To All Plant Sequences

>Glyma01g15506.2   sequence type=transcript   gene model=Glyma01g15506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGAATGTAAATAAATGTACAATTTATTCAAAACTCTCATAAACAAAAGGCTAAATTGGAAACTCTCCACAAGAGTTAATTTCCACCTGGCTCCCACAATATCTTCTCGTGTGAGAACTCAGTTCTCACCCGCCAAATCCTTTCAAGTTCACTCCCTCCACACAGACCCAATGGAATTCTTTCATCCCCACCACCCATGCTCATGGCCAGTGCCAAACTCCTTCTTCCCTACCCCTTCACCACCAAACTCCCCGGCCCGCGCTACTCTCACCGGCGCTTCACCTGCTCCTCCGTCATCGCCCAATCCGGATCCGCCAAGGAGCACCTCCTCGCCCTCATCGCCGACCAGGACCGTGGCATCAGGACCCAGAGCGACCCCGCGAAGCGCGCCGCAATCGTCCAAGCCATCGATGCGGTGGCTTCCGCGGGCGCCGGCTCGGTGACCACCGGCGATGCGCTGTCGGCGACGTGGCGGCTGCTGTGGACGACAGAGAAGGAGCAGCTCTTCATCATCGAGAAGGCTCCCTTGTTTGGAACCCGAGCCGGCGACGTGTTGCAGGTCATCGATGTTCGGGAAAGAACACTGAACAACGTCATCTCGTTTCCACCTGATGGCGTTTTCTTTGTTCGATCAAGTATTGAGGTTGCGTCACCGCAGAGAGTGAATTTCAGATTTACAAGTGCAGTATTACGTGGGAAGAACTGGGAAATACCATTGCCACCATTTGGACGGGGTTGGTTTGATACTGTGTACCTCGATGACGACCTTCGCGTTGTAAAGGATATCAGAGGAGACTATTTAGTTGTTAACCGAGCTTCCTATAACTGGAAAGAATGTATGGAATCTTCATCGTCATTGTAAGCGCATCTTCGTTAATCAAAACTTCCAACTCAACTGCCCGTATGGTTTTAGTGCAGTCTTTGTGCTTTATTAATTTCTAGCTAGGTCTTGCATCTCTTCTGGTTAAGCTAATTTAATGCTTATTTGTTTGGCTATAAAGTATGGATCAGTTGTACATGTTTTTTATTTAAATATCTTTATAGGAATATGACATAATTTGCATTGTTAGCTGTTTGCTGAATGTATGTATGCCAAAGAAGGTGCTGAATTGTTTGTACTTTACATCTTACTGTTCGTGGCACAGGTGGCTGAAAACGCAACCAGTCTGTATTTTATTCTCTAGAGTCAAACCAGGAGGAGCTCATTAACATGGAGCATTCTAAATTTTAATTAAAAGACAGGATAAGAAACATATATGTTGTTACCTCTAAGGAAAATATTCAGTTTTATAATAGAACTTGGAAAAGGAGTGGGATATCGAGTCATGAAAGTATAGATGCAAAATTTCTTGTTTTCAGCCAATATTGAATTTAAAAATATGTCAGTTCGG

>Glyma01g15506.3   sequence type=transcript   gene model=Glyma01g15506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAAACTCTCCACAAGAGTTAATTTCCACCTGGCTCCCACAATATCTTCTCGTGTGAGAACTCAGTTCTCACCCGCCAAATCCTTTCAAGTTCACTCCCTCCACACAGACCCAATGGAATTCTTTCATCCCCACCACCCATGCTCATGGCCAGTGCCAAACTCCTTCTTCCCTACCCCTTCACCACCAAACTCCCCGGCCCGCGCTACTCTCACCGGCGCTTCACCTGCTCCTCCGTCATCGCCCAATCCGGATCCGCCAAGGAGCACCTCCTCGCCCTCATCGCCGACCAGGACCGTGGCATCAGGACCCAGAGCGACCCCGCGAAGCGCGCCGCAATCGTCCAAGCCATCGATGCGGTGGCTTCCGCGGGCGCCGGCTCGGTGACCACCGGCGATGCGCTGTCGGCGACGTGGCGGCTGCTGTGGACGACAGAGAAGGAGCAGCTCTTCATCATCGAGAAGGCTCCCTTGTTTGGAACCCGAGCCGGCGACGTGTTGCAGGTCATCGATGTTCGGGAAAGAACACTGAACAACGTCATCTCGTTTCCACCTGATGGCGTTTTCTTTGTTCGATCAAGTATTGAGGTTGCGTCACCGCAGAGAGTGAATTTCAGATTTACAAGTGCAGTATTACGTGGGAAGAACTGGGAAATACCATTGCCACCATTTGGACGGGGTTGGTAAGTACTTCAAGTTTACTATGTAGCTGAAAAATTTTGCTCAATGATTTAGGAATGTTTTTTATATGTATTCTTATATGATAATTCTTAGAATGTGTGTTTGTGTCTAACTTAATTCCAAGGCTCATAGGGTGAGGGTTGTCCCCCATATATATACTATATCTTGACACTATCTCTATCCGATGTGGGACTAGGGTTTTTCCCAATATACCCCCTCACGTCCAATACTTTTGGACTTAGTGCATGAATAATATGGTGGGTGGCCCTTTTGATGGATCTAGGATAAGCTCTGATACCATCTTAAAATAAGAGAAAAAATAGAGGAAAGTTGAGTGAAAATCGTGTATTAGTGTACCCAGCGGATGCATGTTTATATAGGATAATTACATTAATTGTACATAAATAAAAGATATTTTGTTTCCTCTAAATCAAAGATAATGTCTCTATGAACTACAATTATTACATGATAACCAACAATTTCAAAGCTCATAGTTAATCATTTTGTTTTTTTATAATTTTCAAATCTAAGGATTTGCTTGGTAGAGATGAAACTAAATTGAAGAGTTGAAAATGTGGACAAAAATTATTATAAGCTTGTGTGGTTAGAGGGATTGCTAGGAATAACTTTCATTGATGAAACCGAAGTATTTGTATTTTAGGGTTGACAATAACAAATGCTTTTTATATTGAATTTGAGTTGAAAATGAATTAAAATGAAATATCAATTTTACTTTTACTATTACTCTATATTTATTGCTTGATTCATGTATTATGTTTATAAATGCCATTCATATGGATAAGACAACAATTAGGAGTATAATACGTGACTTTATTTTATTTTATATTTAGATTCATACTAAACCATACTAATAGTGAAAGAGGTGTGGAACTCACACTAATAGTGAAAATTTCTATACAATTCCTCTCCCCTTCTTAGAAACCAAACCTACCCTTAAGGAACTACATCTACCAAGTCTTGTCCAGGTGAAAACTGTTAAAATGAGATATGATGGAATAGCTTCAGGTGGAAAGACACTCAACTTCACACAAACACACACCATGATGCAATTTACAACGCTAATGATAAATGGATGCTATTTCCTAGACATCAATTCCTATGAAACGTTTAATGCATCTAGCATATGTTACATGAAACATGTCCTTATTTTAATGCTTCCCCTCAAGTTAGAGGTTACTAAGCTTTAAGCTTGTAAGAAATAAACCTTTAAAAGAGAAACAAATTATGGTCTCCACTAGACATGGTTGTAATAGCAAGATATTAGACCAAAAGAGAACCATAGAACACTGCTAAAGTCTGGCAGAAAAGGTACCACAAGAAAAGGGATCTGAGAATGGAGGACTAGAATTCCTTTGAAGGTTGACAGTTGCTGGAGTAACGTCATCATGATACAATTTACAAGGCTAAGGCTGAGTTTGATACTGTGTACCTCGATGACGACCTTCGCGTTGTAAAGGATATCAGAGGAGACTATTTAGTTGTTAACCGAGCTTCCTATAACTGGAAAGAATGTATGGAATCTTCATCGTCATTGTAAGCGCATCTTCGTTAATCAAAACTTCCAACTCAACTGCCCGTATGGTTTTAGTGCAGTCTTTGTGCTTTATTAATTTCTAGCTAGGTCTTGCATCTCTTCTGGTTAAGCTAATTTAATGCTTATTTGTTTGGCTATAAAGTATGGATCAGTTGTACATGTTTTTTATTTAAATATCTTTATAGGAATATGACATAATTTGCATTGTTAGCTGTTTGCTGAATGTATGTATGCCAAAGAAGGTGCTGAATTGTTTGTACTTTAC

Coding sequences of Glyma01g15506

Limit To All Plant Sequences

>Glyma01g15506.1   sequence type=CDS   gene model=Glyma01g15506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGTGCCAAACTCCTTCTTCCCTACCCCTTCACCACCAAACTCCCCGGCCCGCGCTACTCTCACCGGCGCTTCACCTGCTCCTCCGTCATCGCCCAATCCGGATCCGCCAAGGAGCACCTCCTCGCCCTCATCGCCGACCAGGACCGTGGCATCAGGACCCAGAGCGACCCCGCGAAGCGCGCCGCAATCGTCCAAGCCATCGATGCGGTGGCTTCCGCGGGCGCCGGCTCGGTGACCACCGGCGATGCGCTGTCGGCGACGTGGCGGCTGCTGTGGACGACAGAGAAGGAGCAGCTCTTCATCATCGAGAAGGCTCCCTTGTTTGGAACCCGAGCCGGCGACGTGTTGCAGGTCATCGATGTTCGGGAAAGAACACTGAACAACGTCATCTCGTTTCCACCTGATGGCGTTTTCTTTGTTCGATCAAGTATTGAGGTTGCGTCACCGCAGAGAGTGAATTTCAGATTTACAAGTGCAGTATTACGTGGGAAGAACTGGGAAATACCATTGCCACCATTTGGACGGGGTTGGTTTGATACTGTGTACCTCGATGACGACCTTCGCGTTGTAAAGGATATCAGAGGAGACTATTTAGTTGTTAACCGAGCTTCCTATAACTGGAAAGAATGTATGGAATCTTCATCGTCATTGTGGCTGAAAACGCAACCAGTCTGTATTTTATTCTCTAGAGTCAAACCAGGAGGAGCTCATTAA

>Glyma01g15506.2   sequence type=CDS   gene model=Glyma01g15506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCATGGCCAGTGCCAAACTCCTTCTTCCCTACCCCTTCACCACCAAACTCCCCGGCCCGCGCTACTCTCACCGGCGCTTCACCTGCTCCTCCGTCATCGCCCAATCCGGATCCGCCAAGGAGCACCTCCTCGCCCTCATCGCCGACCAGGACCGTGGCATCAGGACCCAGAGCGACCCCGCGAAGCGCGCCGCAATCGTCCAAGCCATCGATGCGGTGGCTTCCGCGGGCGCCGGCTCGGTGACCACCGGCGATGCGCTGTCGGCGACGTGGCGGCTGCTGTGGACGACAGAGAAGGAGCAGCTCTTCATCATCGAGAAGGCTCCCTTGTTTGGAACCCGAGCCGGCGACGTGTTGCAGGTCATCGATGTTCGGGAAAGAACACTGAACAACGTCATCTCGTTTCCACCTGATGGCGTTTTCTTTGTTCGATCAAGTATTGAGGTTGCGTCACCGCAGAGAGTGAATTTCAGATTTACAAGTGCAGTATTACGTGGGAAGAACTGGGAAATACCATTGCCACCATTTGGACGGGGTTGGTTTGATACTGTGTACCTCGATGACGACCTTCGCGTTGTAAAGGATATCAGAGGAGACTATTTAGTTGTTAACCGAGCTTCCTATAACTGGAAAGAATGTATGGAATCTTCATCGTCATTGTAA

>Glyma01g15506.3   sequence type=CDS   gene model=Glyma01g15506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCATGGCCAGTGCCAAACTCCTTCTTCCCTACCCCTTCACCACCAAACTCCCCGGCCCGCGCTACTCTCACCGGCGCTTCACCTGCTCCTCCGTCATCGCCCAATCCGGATCCGCCAAGGAGCACCTCCTCGCCCTCATCGCCGACCAGGACCGTGGCATCAGGACCCAGAGCGACCCCGCGAAGCGCGCCGCAATCGTCCAAGCCATCGATGCGGTGGCTTCCGCGGGCGCCGGCTCGGTGACCACCGGCGATGCGCTGTCGGCGACGTGGCGGCTGCTGTGGACGACAGAGAAGGAGCAGCTCTTCATCATCGAGAAGGCTCCCTTGTTTGGAACCCGAGCCGGCGACGTGTTGCAGGTCATCGATGTTCGGGAAAGAACACTGAACAACGTCATCTCGTTTCCACCTGATGGCGTTTTCTTTGTTCGATCAAGTATTGAGGTTGCGTCACCGCAGAGAGTGAATTTCAGATTTACAAGTGCAGTATTACGTGGGAAGAACTGGGAAATACCATTGCCACCATTTGGACGGGGTTGGTAA

Predicted protein sequences of Glyma01g15506

Limit To All Plant Sequences

>Glyma01g15506.1   sequence type=predicted peptide   gene model=Glyma01g15506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAKLLLPYPFTTKLPGPRYSHRRFTCSSVIAQSGSAKEHLLALIADQDRGIRTQSDPAKRAAIVQAIDAVASAGAGSVTTGDALSATWRLLWTTEKEQLFIIEKAPLFGTRAGDVLQVIDVRERTLNNVISFPPDGVFFVRSSIEVASPQRVNFRFTSAVLRGKNWEIPLPPFGRGWFDTVYLDDDLRVVKDIRGDYLVVNRASYNWKECMESSSSLWLKTQPVCILFSRVKPGGAH*

>Glyma01g15506.2   sequence type=predicted peptide   gene model=Glyma01g15506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMASAKLLLPYPFTTKLPGPRYSHRRFTCSSVIAQSGSAKEHLLALIADQDRGIRTQSDPAKRAAIVQAIDAVASAGAGSVTTGDALSATWRLLWTTEKEQLFIIEKAPLFGTRAGDVLQVIDVRERTLNNVISFPPDGVFFVRSSIEVASPQRVNFRFTSAVLRGKNWEIPLPPFGRGWFDTVYLDDDLRVVKDIRGDYLVVNRASYNWKECMESSSSL*

>Glyma01g15506.3   sequence type=predicted peptide   gene model=Glyma01g15506   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMASAKLLLPYPFTTKLPGPRYSHRRFTCSSVIAQSGSAKEHLLALIADQDRGIRTQSDPAKRAAIVQAIDAVASAGAGSVTTGDALSATWRLLWTTEKEQLFIIEKAPLFGTRAGDVLQVIDVRERTLNNVISFPPDGVFFVRSSIEVASPQRVNFRFTSAVLRGKNWEIPLPPFGRGW*

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