SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G45332 | AT | Annotation by Michelle Graham. TAIR10: Translation elongation factor EFG/EF2 protein | chr1:17172507-17176683 REVERSE LENGTH=754 | SoyBase | E_val: 0 | ISS |
| GO:0006414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational elongation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0008135 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding | SoyBase | N/A | ISS |
| PTHR23115 | Panther | TRANSLATION FACTOR | JGI | ISS | |
| PTHR23115:SF13 | Panther | TRANSLATION ELONGATION FACTOR G | JGI | ISS | |
| PF00679 | PFAM | Elongation factor G C-terminus | JGI | ISS | |
| PF03144 | PFAM | Elongation factor Tu domain 2 | JGI | ISS | |
| PF03764 | PFAM | Elongation factor G, domain IV | JGI | ISS | |
| UniRef100_G7KT52 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor G n=1 Tax=Medicago truncatula RepID=G7KT52_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CB6F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CB6F related cluster n=1 Tax=unknown RepID=UPI000233CB6F | SoyBase | E_val: 0 | ISS |
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Glyma01g14800 not represented in the dataset |
Glyma01g14800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g075400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g14800.1 sequence type=CDS gene model=Glyma01g14800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTAGTGCTTTCAAAAATAAGGGGGTACAGCCGCTTCTGGATGGTGTAATTAGTTATCTGCCATGTCCAATAGAAGTTAGTAATTATGCCCTTGACCAAGCTAAGAATGAGGACAAGGTTGAGTTGCGTGGAAGTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAGAATTTACGAGGGTGTGATTCGGAAGGGTGATTTTATTATTAATGTAAACACTGGCAAGAAGATCAAGGTTCCTCGTTTGGTTCGGATGCATTCTGATGAGATGGAGGACATTCAAGAGGCTCATGCTGGGCAAATAGTTGCTGTATTTGGTGTCGAATGTGCATCAGGAGATACTTTTACTGACGGTTCAGTTAAATACACAATGACTTCTATGAATGTTCCTGAGCCAGTGATGTCATTAGCCGTACAGCCGGTTTCTAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAATCGCTTCCAAAAAGAAGATCCTACATTTCGTGTTGGCTTGGACCCGGAGAGTGGGCAGACAATCATTTCTGGAATGGGGGAACTGCATTTAGATATCTATGTTGAACGCATTAGGAGAGAGTATAAGGTTGATGCTTCAGTTGGAAAACCCCGTGTTAACTTCAGAGAAACTGTTACTCAACGTGCTGATTTTGACTATTTGCATAAGAAGCAAAGTGGAGGACAAGGTCAATATGGACGGGTAATTGGGTATATTGAACCACTTCCTGCAGGGTCATCAACTAAGTTTGCATTTGAAAACTTGCTTGTGGGTCAAGCTATTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTCAAAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTTGAAAATCTTCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGTTGGCTTCTATCTATGCTTTTAGACAGTGTTATGCAGCTTCCAGACCGGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACAAGAGAAAAGGTGTGATTGTTGGAAATGATCAGGAAGGAGATGATTCTGTTATTACTGCTCATGTCCCTCTTAACAATATGTTTGGATACTCTACAGCTCTTCGCTCAATGACACAGGGCAAAGGTGAATTCACCATGGAATACAAGGAACATTTACCAGTTTCTCATGATGTACAGACGCAACTGATAAACACGTACAAGGGAAATAAGGAAGGTGAATAA
>Glyma01g14800.1 sequence type=predicted peptide gene model=Glyma01g14800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSAFKNKGVQPLLDGVISYLPCPIEVSNYALDQAKNEDKVELRGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVECASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPAGSSTKFAFENLLVGQAIPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHLPVSHDVQTQLINTYKGNKEGE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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