SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45000 | AT | Annotation by Michelle Graham. TAIR10: structural constituent of nuclear pore | chr2:18564156-18567632 FORWARD LENGTH=739 | SoyBase | E_val: 8.00E-135 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0017056 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of nuclear pore | SoyBase | N/A | ISS |
| KOG2196 | KOG | Nuclear porin | JGI | ISS | |
| PTHR12084 | Panther | NUCLEAR PORE GLYCOPROTEIN P62-RELATED | JGI | ISS | |
| PF05064 | PFAM | Nsp1-like C-terminal region | JGI | ISS | |
| UniRef100_G7KTZ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear pore glycoprotein n=1 Tax=Medicago truncatula RepID=G7KTZ4_MEDTR | SoyBase | E_val: 9.00E-137 | ISS |
| UniRef100_UPI000233781A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233781A related cluster n=1 Tax=unknown RepID=UPI000233781A | SoyBase | E_val: 0 | ISS |
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Glyma01g14373 not represented in the dataset |
Glyma01g14373 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g074700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g14373.1 sequence type=CDS gene model=Glyma01g14373 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGGTTTCTCCTTCGGATCCTCTTCATCCCAATCTTCTGCATTCTCCTTCACAAACCCTTCTTCTTCCGGTTCCGCTTCTTCTTCGTCTTCCCCGTTCTCACTTGGCTCCACCCCCGCTTTCTCATTCGGATCCTCCTCTCTCTTCAGCACAAACCCTACATCCGCCGCGTCCTCTTCTCCATCCCCTCTTTCTTTCTCCTTTGCTTCTTCTTCTTCTGCACCCTCCTTCTCCTTGGCCTCCTCTTCCTCTCCCGCACCCGCATCCGGCGCCACCGGTTCTTCAATTTTCGGTGCCGTAACGGCGCCGTTTGGGGCAGCAGTGTCCTCCGCCGCGTCGCCTTTTGGTGGAACGCCCTCTGTCTCGACGACGCCATTTGGAGCAGCAGCGTCCCCGGTTTCTACGAATCTGTTTGGAGCAGGGTCCTCTGCTTCCACCACTCTATTTGGTGGAACTTCCTCAGCTTCAACGACGCCGTTTGGAGCAGGGTCCTCAGCCTCAACCACCACTCCATTTGGTGGAACGCCCTCTGCTCCTACGACGCCGTTTGGCGCAGCTTCCTCAACGGCCACAACAACATCCACGACTCTGTTCGGAGGAGCGTCTTCTGCTTCAGCGACGCCGTTTGGTGCAGCGTCCTCAACTTCAACGACGCCGTTTGGAGTGGCGTCCTCAGCTTCAACGACGCCGTTTGGTGGAACGTCCTCTTCATCGACACTATTCGGATTTGGCGGAACAGCTTCTGCAACAACGACGCCGTTTGGAAATAGTAGTACTGCCTCTGCCTCAACTTCAGCCTTTGGAGCATCTTCTTCTGCCGCACCGTTGTTTGGAGGAGCATCCTCAGCCGCAACGACGCCGTTTGGAGGTAGTAGTACTGCCTCTGCCTCAACTTCTGCCTTTGGAGCATCGTTGAGTGCTTCTCCTTCTTCAGCTGCAACTACCTCTCCTTTGTTCTCGGGTGCATTTGCTACCACTGGAGCTTCTTCGTCCTCGGCCTCAACGACGTCGTTTTCAGGGTTTGCAAAGCCGTCTACTCCAGCCGCTACAACGACGCCGTCTAGCTCTTCGGGATTCTCCCTCGCTTCTCATCCCTCTTTTGGGTTCCCCAATGCAGCTTCGGCTTCGGCTTTGGCTTCTTCTGCTGCTTCCACAGTTTCTGGTACACCGGCTTCGAAGCCCTCTTCGGGTTCTGCTTTTTCGTTCACCACGTCTTCGGCACCGCTGTTCTCGACGGTGACGACCACCATGGCTTCCACCGTGGTTACTGGTAGCACTACCTTGTCGCCTTCTCTGCCTGCATTTGGTGCTACTGCCCCATCTTCTGTCGCCGCGAGTGCTTCTGCGACTCCTGCTGCTTCTACTGGTGCTGCTGCTTCTGCCAGCGGAGGATCATCTTTTGCAGGATTTGGTGTTGGAAGCACGGCGTCCGCTGCTTCTTTTGGGACTGGGTTTTCCTTTGCGAATAAGTCGTCAACGCCGGCAGTTTCTAGTGTTACTGCTTCTGCATTTGGGGTTAGCACTTCAACTTCTACTGCTCCAGCAATTTTGAGTTCCAGCACTAGTGCAACTCAGACATCATCCGCTCTTGTTGTGGCTTCCACTAGTGGAACTACTTCAACTGTCAGCACTTCAGTTGCTGCTTCACCAAAATTGCCATCTGAAATCACAGGGAAAACGGTGGAGGAGATTATCAAGGAGTGGAATGCTGAGTTGCAAGAGCGAACTGGAAAATTTAAAAAACAAGCAAATGCAATAGCTGAATGGGATCGGAGGATTTTGAACAATCGTGATGTTTTATTGAGACTTGAGATTGAAGTGGCAAAAGTAGTTGAGACACAGTCAAATTTGGAGCGGCAGTTGGAGTTGATAGAGACTCATCAACAGGAGGTTGATAAGGCTTTACAAAGTATGGAGGAAGAAGCAGAATGTATTTACAAGGATGAGCGTGGATTACTCCTTGATGATGAAGCTGCATCTACAAGAGATGCAATGTATGAACAATCTGAATTGATTGAAAGGGAACTTGAGCAGATGACTGAACAAATCAAATCAATTATCCAATCCCTTAATTCGAACCAGGGTGGAGAGCATGATACCCTTGATGGAATGACTCCATTAGATGCAGTTGTTCGAATTCTAAATAATCAACTAACTTCTTTGATGTGGATAGATGAAAAGGCCGAAGAATTTTCTTCCCGTATTCAGAAGCTAGCTAACCCAGGTTCTGCTTCAGATCGTGAACTGACAGGTTCAGGAATCTGGATGTCTTGA
>Glyma01g14373.1 sequence type=predicted peptide gene model=Glyma01g14373 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGFSFGSSSSQSSAFSFTNPSSSGSASSSSSPFSLGSTPAFSFGSSSLFSTNPTSAASSSPSPLSFSFASSSSAPSFSLASSSSPAPASGATGSSIFGAVTAPFGAAVSSAASPFGGTPSVSTTPFGAAASPVSTNLFGAGSSASTTLFGGTSSASTTPFGAGSSASTTTPFGGTPSAPTTPFGAASSTATTTSTTLFGGASSASATPFGAASSTSTTPFGVASSASTTPFGGTSSSSTLFGFGGTASATTTPFGNSSTASASTSAFGASSSAAPLFGGASSAATTPFGGSSTASASTSAFGASLSASPSSAATTSPLFSGAFATTGASSSSASTTSFSGFAKPSTPAATTTPSSSSGFSLASHPSFGFPNAASASALASSAASTVSGTPASKPSSGSAFSFTTSSAPLFSTVTTTMASTVVTGSTTLSPSLPAFGATAPSSVAASASATPAASTGAAASASGGSSFAGFGVGSTASAASFGTGFSFANKSSTPAVSSVTASAFGVSTSTSTAPAILSSSTSATQTSSALVVASTSGTTSTVSTSVAASPKLPSEITGKTVEEIIKEWNAELQERTGKFKKQANAIAEWDRRILNNRDVLLRLEIEVAKVVETQSNLERQLELIETHQQEVDKALQSMEEEAECIYKDERGLLLDDEAASTRDAMYEQSELIERELEQMTEQIKSIIQSLNSNQGGEHDTLDGMTPLDAVVRILNNQLTSLMWIDEKAEEFSSRIQKLANPGSASDRELTGSGIWMS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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