SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02050 | AT | Annotation by Michelle Graham. TAIR10: Chalcone and stilbene synthase family protein | chr1:359164-360441 REVERSE LENGTH=395 | SoyBase | E_val: 0 | ISS |
| GO:0009699 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010584 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen exine formation | SoyBase | N/A | ISS |
| GO:0030639 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyketide biosynthetic process | SoyBase | N/A | ISS |
| GO:0080110 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sporopollenin biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0090439 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tetraketide alpha-pyrone synthase activity | SoyBase | N/A | ISS |
| PTHR11877 | Panther | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | JGI | ISS | |
| PTHR11877:SF9 | Panther | GERANYL GERANYL DIPHOSPHATE SYNTHASE | JGI | ISS | |
| PF00195 | PFAM | Chalcone and stilbene synthases, N-terminal domain | JGI | ISS | |
| PF02797 | PFAM | Chalcone and stilbene synthases, C-terminal domain | JGI | ISS | |
| UniRef100_G7JTW6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chalcone synthase n=1 Tax=Medicago truncatula RepID=G7JTW6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J6D7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J6D7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g13900 not represented in the dataset |
Glyma01g13900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g073600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g13900.1 sequence type=CDS gene model=Glyma01g13900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCAAGGTGATTCTAATGGTAGCTCCAAGCAGCTTGCTGCAGTTACTAGGCGTGTCCCTACTCCCGGGAAGGCCACAATACTTGCAATAGGCAAGGCCTTCCCTAGCCAAATCATCCCTCAGGAGTGTTTGGTGGAGGGCTACATTCGTGACACTAAGTGTGAAGATGCATATATTAAGGAGAAATTAGAGCGTCTTTGCAAGAACACCACTGTGAAGACAAGGTACACAGTGATGTCAAAGGAGATCCTTGACAAGTACCCAGAATTGGCCACAGAGGGCTCACCAACCATAAGGCAAAAGCTTGAAATAGCTAATCCAGCAGTGGTGGAGATGGCTACAAAGGCCAGCCTTTGTTGCATCAAGGAATGGGGAAGGCCTGCTCAAGACATCACCCACATTGTCTATGTTTCCTCGAGTGAAATCCGCCTACCAGGTGGTGACCTTTACTTGGCGAATGAGCTTGGCCTTCGGAGCGATGTCAGTCGCGTAATGCTCTACTTTCTAGGTTGCTATGGTGGTGTCACTGGCCTGAGAGTTGCCAAGGACATAGCAGAGAACAACCCTGGTAGTAGGGTTCTGCTGACTACCTCTGAGACCACCATACTTGGGTTCAGACCCCCCAACAAAGCTAGGCCATATGATCTTGTGGGGGCTGCACTTTTTGGTGATGGTGCTGCAGCTGTGATAATTGGAGCCAACCCTGTGATGGGTCAAGAGTCTCCCTTCATGGAGTTGAGCTATGCTGTCCAAAAGTTCCTGCTTGACACACACAATGTGATTGATGGGAGACTCTCTGAAGAAGGCATAAACTTCAAACTTGGAAGGGACCTTCCTCAGAAAATTGAAGACAACATTGAGGAGTTCTGCAGGAAGCTCATGGCTAAAAGCAGTGCCAAGGACTTCAATGATTTGTTCTGGGCTGTTCACCCTGGGGGGCCTGCAATTCTCAACAGGCTTGAGAGTACACTCAAATTGAGCAATGACAAGTTGGAGTGCAGTAGGAAGGCACTAATGGACTATGGGAATGTTAGCAGCAACACTATATTCTATGTCATGGAGTACATGAGGGAGTATCTGAAAGAAGATGGAGAAGAATGGGGCTTGGGATTGGCATTTGGTCCAGGAATTACTTTTGAAGGCATTCTCCTGCGCAGCCTTTGA
>Glyma01g13900.1 sequence type=predicted peptide gene model=Glyma01g13900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPQGDSNGSSKQLAAVTRRVPTPGKATILAIGKAFPSQIIPQECLVEGYIRDTKCEDAYIKEKLERLCKNTTVKTRYTVMSKEILDKYPELATEGSPTIRQKLEIANPAVVEMATKASLCCIKEWGRPAQDITHIVYVSSSEIRLPGGDLYLANELGLRSDVSRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETTILGFRPPNKARPYDLVGAALFGDGAAAVIIGANPVMGQESPFMELSYAVQKFLLDTHNVIDGRLSEEGINFKLGRDLPQKIEDNIEEFCRKLMAKSSAKDFNDLFWAVHPGGPAILNRLESTLKLSNDKLECSRKALMDYGNVSSNTIFYVMEYMREYLKEDGEEWGLGLAFGPGITFEGILLRSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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