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Report for Sequence Feature Glyma01g13777

Feature Type:gene_model
Chromosome:Gm01
Start:16940734
stop:16941754
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g13777
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20380AT Annotation by Michelle Graham. TAIR10: phosphate transporter 4;5 | chr5:6887936-6892358 REVERSE LENGTH=517 SoyBaseE_val: 1.00E-36ISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005315GO-mf Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity SoyBaseN/AISS
PTHR11662Panther PHOSPHATE TRANSPORTER-RELATED JGI ISS
PTHR11662:SF23Panther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATED JGI ISS
PF07690PFAM Major Facilitator Superfamily JGI ISS
UniRef100_B9T601UniRef Annotation by Michelle Graham. Most informative UniRef hit: Inner membrane transport protein yjjL, putative n=1 Tax=Ricinus communis RepID=B9T601_RICCO SoyBaseE_val: 2.00E-36ISS
UniRef100_UPI000233E0A3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E0A3 related cluster n=1 Tax=unknown RepID=UPI000233E0A3 SoyBaseE_val: 4.00E-41ISS

Expression Patterns of Glyma01g13777
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g13777 not represented in the dataset
Glyma01g13777 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g13777 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g073900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g13777
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g13777
>Glyma01g13777.1   sequence type=CDS   gene model=Glyma01g13777   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGCTTACTATTGTCAAGGGTTTTGGTTGGGATAGGCAAAGGTGTTTCACCATCTGCTGCTACTGATCTCATTGCCAGGTCAACACCATTGGAAGAGCGCTCACGAGCAGTAGCATTTGTTTTTGGTGGTTTGAGTGTTGGAAGTGTTATGGGGCTTCTTTTGGCTCCTCCCCTTATCCAAAATCTTGGTTGGGAATCCGTATTCTATATATTTGGCCTCTTGGGGGTTGCTTGGTAA
Predicted protein sequences of Glyma01g13777
>Glyma01g13777.1   sequence type=predicted peptide   gene model=Glyma01g13777   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGLLLSRVLVGIGKGVSPSAATDLIARSTPLEERSRAVAFVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGVAW*






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