Glyma01g13170 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g13170): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g13170): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma01g13170

Feature Type:	gene_model
Chromosome:	Gm01
Start:	16335426
stop:	16339127
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g13170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46800	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr5:18988779-18989810 REVERSE LENGTH=300	SoyBase	E_val: 2.00E-169	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0015822	GO-bp	Annotation by Michelle Graham. GO Biological Process: ornithine transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG0758	KOG	Mitochondrial carnitine-acylcarnitine carrier protein	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF114	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_C6TA29	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TA29_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7KF41	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial carnitine/acylcarnitine carrier-like protein n=1 Tax=Medicago truncatula RepID=G7KF41_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g13170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g13170 not represented in the dataset	Glyma01g13170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g13170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g097100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g13170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g13170

Limit To All Plant Sequences

>Glyma01g13170.3   sequence type=transcript   gene model=Glyma01g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACAAACTTGGGACTCATAACAGCGTGACGCGTTGGCCTGTTGGGCGCAGTCATTATCTCTCTCAATTTTTTTCTTAAAGTGAGTGATTGGGTGGTGCTGAGTCAGGAAAGTGGCTGAGATTGGGTTTTGGTTTTGGTGTGATTCCAACAAATCCACGTTTGAGCCACACACACTTTGTCTTTCTGGCTTTGTTTTCTTTGTCCCATTCCTATCCCAAACTTTCTTGTGGCTCTGAGATTCAATTCCCCGTTTTGTTTTTTACTCTTTAGACTCTCCGCCACCTGAACATTACCCATCCATCTCATAGCACTCACCCCAGAAAAGCACCGTCACTTGTTCGTTTCAACGTTCTTCTATTGATACGTTAATGCTTTTTGATTCCTTTCAGATTTTTCTAACTAACTAACTATCTGTGAATCAAAGAAATTTCAGTGTACGTTTCGTCTGATTCTTTGGGATACTGCTTGAGCTCGCAGATGGGAGATGTGGCTAAGGACCTTGCAGCTGGGACTGTTGGAGGGGCAGCACAGTTGATATGTGGACACCCCTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTGCACCACTCCCTGGTCAGCTTCCCAAGTATTCAGGTGCATTTGATGCTGTCAAGCAGACAATAGCAGCTGAAGGACCAAGGGGTTTATACAAAGGCATGGGTGCTCCGCTTGCTACGGTAGCAGCCTTCAATGCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACATTAGTGAGGTCCAATCCTGGTGCCCCCCTCACAGTGGATCAGCAGGTTGTTTGTGGGGCTGGAGCCGGAGTAGCTGTTTCCATTCTTGCTTGCCCAACTGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCGCTTGCTGGCTCTGAAACAGCTACCGTGGCTGTTAAGTATGGAGGACCCATGGATGTGGCCAGGCATGTTCTCAAGTCAGAAGGGGGCATGAGAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGGGCGTGAGATACCTGGAAATGCTATCATGTTTGGTGTATACGAAGCATTAAAGCAAAAGTTTGCAGGAGGCACTGATACTTCTGGGCTAAGTAGAGGTTCTCTGATTGTTGCCGGAGGCTTGGCTGGAGCTTCCTTCTGGTTCTTAGTTTACCCAACTGATGTTATTAAGAGTGTGATTCAAGTAGATGATCACAGAAACCCAAAATTTTCTGGTTCATTTGATGCATTCAGAAAGATTCGAGCTACAGAAGGGTTCAAAGGCTTGTATAAGGGTTTTGGTCCTGCAATGGCTCGAAGTGTTCCTGCAAATGCAGCATGTTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGATTAATTCTTGTAACAGGCTTAATATCAAATTCTCATGTTTTCTTTTTCTTTTTGTTCACTAAACATTTTATTCCATCCATTTATATAACCGCACAAGCGCGTCTTCTTTATTGCTTCCGTCAAAGACTCATTCTTTCACAAGTAGTAATACAAACAACCTTATTAGATTCAGCCTGAGGGGCAAAGATTA

>Glyma01g13170.4   sequence type=transcript   gene model=Glyma01g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGCATATCGCGTCGGCAGTCCACAAACTTGGGACTCATAACAGCGTGACGCGTTGGCCTGTTGGGCGCAGTCATTATCTCTCTCAATTTTTTTCTTAAAGTGAGTGATTGGGTGGTGCTGAGTCAGGAAAGTGGCTGAGATTGGGTTTTGGTTTTGGTGTGATTCCAACAAATCCACGTTTGAGCCACACACACTTTGTCTTTCTGGCTTTGTTTTCTTTGTCCCATTCCTATCCCAAACTTTCTTGTGGCTCTGAGATTCAATTCCCCGTTTTGTTTTTTACTCTTTAGACTCTCCGCCACCTGAACATTACCCATCCATCTCATAGCACTCACCCCAGAAAAGCACCGTCACTTGTTCGTTTCAACGTTCTTCTATTGATACGTTAATGCTTTTTGATTCCTTTCAGATTTTTCTAACTAACTAACTATCTGTGAATCAAAGAAATTTCAGTGTACGTTTCGTCTGATTCTTTGGGATACTGCTTGAGCTCGATGGGAGATGTGGCTAAGGACCTTGCAGCTGGGACTGTTGGAGGGGCAGCACAGTTGATATGTGGACACCCCTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTGCACCACTCCCTGGTCAGCTTCCCAAGTATTCAGGTGCATTTGATGCTGTCAAGCAGACAATAGCAGCTGAAGGACCAAGGGGTTTATACAAAGGCATGGGTGCTCCGCTTGCTACGGTAGCAGCCTTCAATGCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACATTAGTGAGGTCCAATCCTGGTGCCCCCCTCACAGTGGATCAGCAGGTTGTTTGTGGGGCTGGAGCCGGAGTAGCTGTTTCCATTCTTGCTTGCCCAACTGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCGCTTGCTGGCTCTGAAACAGCTACCGTGGCTGTTAAGTATGGAGGACCCATGGATGTGGCCAGGCATGTTCTCAAGTCAGAAGGGGGCATGAGAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGGGCGTGAGATACCTGGAAATGCTATCATGTTTGGTGTATACGAAGCATTAAAGCAAAAGTTTGCAGGAGGCACTGATACTTCTGGGCTAAGTAGAGGTTCTCTGATTGTTGCCGGAGGCTTGGCTGGAGCTTCCTTCTGGTTCTTAGTTTACCCAACTGATGTTATTAAGAGTGTGATTCAAGTAGATGATCACAGAAACCCAAAATTTTCTGGTTCATTTGATGCATTCAGAAAGATTCGAGCTACAGAAGGGTTCAAAGGCTTGTATAAGGGTTTTGGTCCTGCAATGGCTCGAAGTGTTCCTGCAAATGCAGCATGTTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGATTAATTCTTGTAACAGGCTTAATATCAAATTCTCATGTTTTCTTTTTCTTTTTGTTCACTAAACATTTTATTCCATCCATTTATATAACCGCACAAGCGCGTCTTCTTTATTGCTTCCGTCAAAGACTCATTCTTTCACAAGTAGTAATACAAACAACCTTATTAGATTCAGCCTGAGGGGCAAAGATTA

Coding sequences of Glyma01g13170

Limit To All Plant Sequences

>Glyma01g13170.1   sequence type=CDS   gene model=Glyma01g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATGTGGCTAAGGACCTTGCAGCTGGGACTGTTGGAGGGGCAGCACAGTTGATATGTGGACACCCCTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTGCACCACTCCCTGGTCAGCTTCCCAAGTATTCAGGTGCATTTGATGCTGTCAAGCAGACAATAGCAGCTGAAGGACCAAGGGGTTTATACAAAGGCATGGGTGCTCCGCTTGCTACGGTAGCAGCCTTCAATGCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACATTAGTGAGGTCCAATCCTGGTGCCCCCCTCACAGTGGATCAGCAGGTTGTTTGTGGGGCTGGAGCCGGAGTAGCTGTTTCCATTCTTGCTTGCCCAACTGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCGCTTGCTGGCTCTGAAACAGCTACCGTGGCTGTTAAGTATGGAGGACCCATGGATGTGGCCAGGCATGTTCTCAAGTCAGAAGGGGGCATGAGAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGGGCGTGAGATACCTGGAAATGCTATCATGTTTGGTGTATACGAAGCATTAAAGCAAAAGTTTGCAGGAGGCACTGATACTTCTGGGCTAAGTAGAGGTTCTCTGATTGTTGCCGGAGGCTTGGCTGGAGCTTCCTTCTGGTTCTTAGTTTACCCAACTGATGTTATTAAGAGTGTGATTCAAGTAGATGATCACAGAAACCCAAAATTTTCTGGTTCATTTGATGCATTCAGAAAGATTCGAGCTACAGAAGGGTTCAAAGGCTTGTATAAGGGTTTTGGTCCTGCAATGGCTCGAAGTGTTCCTGCAAATGCAGCATGTTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGA

>Glyma01g13170.3   sequence type=CDS   gene model=Glyma01g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATGTGGCTAAGGACCTTGCAGCTGGGACTGTTGGAGGGGCAGCACAGTTGATATGTGGACACCCCTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTGCACCACTCCCTGGTCAGCTTCCCAAGTATTCAGGTGCATTTGATGCTGTCAAGCAGACAATAGCAGCTGAAGGACCAAGGGGTTTATACAAAGGCATGGGTGCTCCGCTTGCTACGGTAGCAGCCTTCAATGCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACATTAGTGAGGTCCAATCCTGGTGCCCCCCTCACAGTGGATCAGCAGGTTGTTTGTGGGGCTGGAGCCGGAGTAGCTGTTTCCATTCTTGCTTGCCCAACTGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCGCTTGCTGGCTCTGAAACAGCTACCGTGGCTGTTAAGTATGGAGGACCCATGGATGTGGCCAGGCATGTTCTCAAGTCAGAAGGGGGCATGAGAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGGGCGTGAGATACCTGGAAATGCTATCATGTTTGGTGTATACGAAGCATTAAAGCAAAAGTTTGCAGGAGGCACTGATACTTCTGGGCTAAGTAGAGGTTCTCTGATTGTTGCCGGAGGCTTGGCTGGAGCTTCCTTCTGGTTCTTAGTTTACCCAACTGATGTTATTAAGAGTGTGATTCAAGTAGATGATCACAGAAACCCAAAATTTTCTGGTTCATTTGATGCATTCAGAAAGATTCGAGCTACAGAAGGGTTCAAAGGCTTGTATAAGGGTTTTGGTCCTGCAATGGCTCGAAGTGTTCCTGCAAATGCAGCATGTTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGA

>Glyma01g13170.4   sequence type=CDS   gene model=Glyma01g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATGTGGCTAAGGACCTTGCAGCTGGGACTGTTGGAGGGGCAGCACAGTTGATATGTGGACACCCCTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTGCACCACTCCCTGGTCAGCTTCCCAAGTATTCAGGTGCATTTGATGCTGTCAAGCAGACAATAGCAGCTGAAGGACCAAGGGGTTTATACAAAGGCATGGGTGCTCCGCTTGCTACGGTAGCAGCCTTCAATGCTGTCCTGTTTACAGTGAGGGGACAAATGGAAACATTAGTGAGGTCCAATCCTGGTGCCCCCCTCACAGTGGATCAGCAGGTTGTTTGTGGGGCTGGAGCCGGAGTAGCTGTTTCCATTCTTGCTTGCCCAACTGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCGCTTGCTGGCTCTGAAACAGCTACCGTGGCTGTTAAGTATGGAGGACCCATGGATGTGGCCAGGCATGTTCTCAAGTCAGAAGGGGGCATGAGAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGGGCGTGAGATACCTGGAAATGCTATCATGTTTGGTGTATACGAAGCATTAAAGCAAAAGTTTGCAGGAGGCACTGATACTTCTGGGCTAAGTAGAGGTTCTCTGATTGTTGCCGGAGGCTTGGCTGGAGCTTCCTTCTGGTTCTTAGTTTACCCAACTGATGTTATTAAGAGTGTGATTCAAGTAGATGATCACAGAAACCCAAAATTTTCTGGTTCATTTGATGCATTCAGAAAGATTCGAGCTACAGAAGGGTTCAAAGGCTTGTATAAGGGTTTTGGTCCTGCAATGGCTCGAAGTGTTCCTGCAAATGCAGCATGTTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGA

Predicted protein sequences of Glyma01g13170

Limit To All Plant Sequences

>Glyma01g13170.1   sequence type=predicted peptide   gene model=Glyma01g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDVAKDLAAGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQLPKYSGAFDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAVLFTVRGQMETLVRSNPGAPLTVDQQVVCGAGAGVAVSILACPTELIKCRLQAQSALAGSETATVAVKYGGPMDVARHVLKSEGGMRGLFKGLVPTMGREIPGNAIMFGVYEALKQKFAGGTDTSGLSRGSLIVAGGLAGASFWFLVYPTDVIKSVIQVDDHRNPKFSGSFDAFRKIRATEGFKGLYKGFGPAMARSVPANAACFLAYEMTRSALG*

>Glyma01g13170.3   sequence type=predicted peptide   gene model=Glyma01g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDVAKDLAAGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQLPKYSGAFDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAVLFTVRGQMETLVRSNPGAPLTVDQQVVCGAGAGVAVSILACPTELIKCRLQAQSALAGSETATVAVKYGGPMDVARHVLKSEGGMRGLFKGLVPTMGREIPGNAIMFGVYEALKQKFAGGTDTSGLSRGSLIVAGGLAGASFWFLVYPTDVIKSVIQVDDHRNPKFSGSFDAFRKIRATEGFKGLYKGFGPAMARSVPANAACFLAYEMTRSALG*

>Glyma01g13170.4   sequence type=predicted peptide   gene model=Glyma01g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDVAKDLAAGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQLPKYSGAFDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAVLFTVRGQMETLVRSNPGAPLTVDQQVVCGAGAGVAVSILACPTELIKCRLQAQSALAGSETATVAVKYGGPMDVARHVLKSEGGMRGLFKGLVPTMGREIPGNAIMFGVYEALKQKFAGGTDTSGLSRGSLIVAGGLAGASFWFLVYPTDVIKSVIQVDDHRNPKFSGSFDAFRKIRATEGFKGLYKGFGPAMARSVPANAACFLAYEMTRSALG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain