SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17870 | AT | Annotation by Michelle Graham. TAIR10: Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:9928792-9929367 FORWARD LENGTH=191 | SoyBase | E_val: 9.00E-87 | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0080163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0010427 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: abscisic acid binding | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| PF10604 | PFAM | Polyketide cyclase / dehydrase and lipid transport | JGI | ISS | |
| UniRef100_C6TKF4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKF4_SOYBN | SoyBase | E_val: 2.00E-156 | ISS |
| UniRef100_F2YHU9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Abscisic acid receptor PYR1 n=1 Tax=Fragaria x ananassa RepID=F2YHU9_FRAAN | SoyBase | E_val: 8.00E-100 | ISS |
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Glyma01g12970 not represented in the dataset |
Glyma01g12970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g097000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g12970.1 sequence type=CDS gene model=Glyma01g12970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAAAACGCACAGCTCCAGCGCAGAGGAGCAGGATCCGACCCGGCGCCACCTGGATCCCCCACCCGGGTTAACTGCTGAAGAGTTCGAGGACCTCAAACCCTCCGTGCTGGAGCACCACACCTACTCCGTCACACCCACCCGCCAAAGCTCCTCCCTCCTCGCGCAGCGCATCCACGCGCCACCACACGCGGTGTGGTCCGTCGTGCGCTGCTTCGACAACCCACAGGCCTACAAGCACTTCATCAAGAGCTGCCACGTCAAGGAGGGCTTCCAGCTCGCCGTGGGGTCCACCCGCGATGTCCACGTCATCTCAGGGCTACCGGCTGCCACCAGCACCGAGCGCCTCGACCTGCTCGACGACGACAGACACGTCATCGGCTTCACCATCGTCGGGGGCGACCACAGGCTCAGGAACTACCGGTCAGTCACCTCGGTGCACGGGTTCGAGTGCGACGGAAAGATCTGGACCGTTGTTCTGGAATCGTACGTCGTGGACGTGCCCGAAGGGAACACCGAGGAGGACACGCGTCTGTTTGCTGATACTGTTGTGAAGCTGAATCTGCAGAAGCTGGCGTCTGTCAGCGAAGGAATGTGCGGTGACGGTGACGGTGACGGTGACGGTAAGGGTAATAAATCATAG
>Glyma01g12970.1 sequence type=predicted peptide gene model=Glyma01g12970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKTHSSSAEEQDPTRRHLDPPPGLTAEEFEDLKPSVLEHHTYSVTPTRQSSSLLAQRIHAPPHAVWSVVRCFDNPQAYKHFIKSCHVKEGFQLAVGSTRDVHVISGLPAATSTERLDLLDDDRHVIGFTIVGGDHRLRNYRSVTSVHGFECDGKIWTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLASVSEGMCGDGDGDGDGKGNKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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